miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20407 5' -63.5 NC_004688.1 + 85286 0.69 0.323894
Target:  5'- uUCCGCCUCG-GCCu--CCCGCa-GCCu -3'
miRNA:   3'- -AGGCGGGGCgCGGuguGGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 53215 0.69 0.328918
Target:  5'- -gCGCCaggugggcuacggaCCGCGgUACGCCCGCaucgGCCg -3'
miRNA:   3'- agGCGG--------------GGCGCgGUGUGGGCGaa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 64093 0.69 0.331089
Target:  5'- cCCGCCCCuuCGCUguaaugGCAUgCGaCUUGCCa -3'
miRNA:   3'- aGGCGGGGc-GCGG------UGUGgGC-GAACGG- -5'
20407 5' -63.5 NC_004688.1 + 109849 0.69 0.337664
Target:  5'- aUCGCCaUCGUGCCcaucgucGCACUguugaCGCUUGCCg -3'
miRNA:   3'- aGGCGG-GGCGCGG-------UGUGG-----GCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 38689 0.69 0.353372
Target:  5'- cCCGCUCCGcCGCCGC-CgCCGCg-GCg -3'
miRNA:   3'- aGGCGGGGC-GCGGUGuG-GGCGaaCGg -5'
20407 5' -63.5 NC_004688.1 + 23984 0.68 0.361032
Target:  5'- gCCGCCa-GCGCCccggagAUGCCCGCcccgGCCu -3'
miRNA:   3'- aGGCGGggCGCGG------UGUGGGCGaa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 81035 0.68 0.361032
Target:  5'- gCCGCCaCCGUGCC-CACgagagGCUUGCg -3'
miRNA:   3'- aGGCGG-GGCGCGGuGUGgg---CGAACGg -5'
20407 5' -63.5 NC_004688.1 + 58821 0.68 0.361032
Target:  5'- aUCUGCCUCGuCGCCgGCGCCgGg--GCCa -3'
miRNA:   3'- -AGGCGGGGC-GCGG-UGUGGgCgaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 1957 0.68 0.368806
Target:  5'- -aUGCCCCG-GCCAgAgCCGCg-GCCg -3'
miRNA:   3'- agGCGGGGCgCGGUgUgGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 31108 0.68 0.368806
Target:  5'- gUUGCCCaCGCGCUgcgcgguggGCACCCaCaUGCCg -3'
miRNA:   3'- aGGCGGG-GCGCGG---------UGUGGGcGaACGG- -5'
20407 5' -63.5 NC_004688.1 + 15745 0.68 0.368806
Target:  5'- cCCGCCCCGUcaaCCAaacuucaCCGCUcgGCCa -3'
miRNA:   3'- aGGCGGGGCGc--GGUgug----GGCGAa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 86718 0.68 0.376695
Target:  5'- gUCUGCCCCGgGCUuccguacuGCGCCCugaugacgaaGCccGCCa -3'
miRNA:   3'- -AGGCGGGGCgCGG--------UGUGGG----------CGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 26664 0.68 0.376695
Target:  5'- gCCGCCCU--GCUGCugUUGCUUGUCa -3'
miRNA:   3'- aGGCGGGGcgCGGUGugGGCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 63980 0.68 0.384697
Target:  5'- aUCgGCaUCCaGCGCUcgguuGCACCCGCcgcUGCCg -3'
miRNA:   3'- -AGgCG-GGG-CGCGG-----UGUGGGCGa--ACGG- -5'
20407 5' -63.5 NC_004688.1 + 92027 0.68 0.390364
Target:  5'- gCCGCCCCaugccugaccacgaGgGCgggCAUACCCaGCUUGUCa -3'
miRNA:   3'- aGGCGGGG--------------CgCG---GUGUGGG-CGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 26228 0.68 0.39281
Target:  5'- cCCGCCUCGagGCCGCcaACagCGCcUGCCg -3'
miRNA:   3'- aGGCGGGGCg-CGGUG--UGg-GCGaACGG- -5'
20407 5' -63.5 NC_004688.1 + 24821 0.68 0.39281
Target:  5'- gUCCGCCaaGCcgGCUAgGCCgCGCgagaUGCCg -3'
miRNA:   3'- -AGGCGGggCG--CGGUgUGG-GCGa---ACGG- -5'
20407 5' -63.5 NC_004688.1 + 9822 0.68 0.401034
Target:  5'- -aCGUCCgCGgGCC-CGCCCGgaUGUCg -3'
miRNA:   3'- agGCGGG-GCgCGGuGUGGGCgaACGG- -5'
20407 5' -63.5 NC_004688.1 + 65693 0.68 0.401034
Target:  5'- gUCGCCCgGCGCCuaGCuuGCg-GCCu -3'
miRNA:   3'- aGGCGGGgCGCGGugUGggCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 58112 0.68 0.404354
Target:  5'- gCgGCCCC-CGCCACGCUaauccccaccaugauCGCUacUGCUa -3'
miRNA:   3'- aGgCGGGGcGCGGUGUGG---------------GCGA--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.