Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20407 | 5' | -63.5 | NC_004688.1 | + | 2140 | 1.11 | 0.0003 |
Target: 5'- cUCCGCCCCGCGCCACACCCGCUUGCCg -3' miRNA: 3'- -AGGCGGGGCGCGGUGUGGGCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 58506 | 0.74 | 0.148501 |
Target: 5'- -gUGCCCUGCGCCGCagguuuucugGCCCaGCUcgGCCa -3' miRNA: 3'- agGCGGGGCGCGGUG----------UGGG-CGAa-CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 68394 | 0.74 | 0.159956 |
Target: 5'- gUCCaGCaCUCGCcaggcgagGCCAUACCCGCUaccUGCCa -3' miRNA: 3'- -AGG-CG-GGGCG--------CGGUGUGGGCGA---ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 26354 | 0.74 | 0.163949 |
Target: 5'- cCCGCgCCCaugGCGCCcuggauggcaGCGCCCGCaagGCCa -3' miRNA: 3'- aGGCG-GGG---CGCGG----------UGUGGGCGaa-CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 5946 | 0.73 | 0.199226 |
Target: 5'- -aUGCUcuCCGCGCCguGCGCCUGCUUGgCCu -3' miRNA: 3'- agGCGG--GGCGCGG--UGUGGGCGAAC-GG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 26115 | 0.72 | 0.214078 |
Target: 5'- aCCGCCCgCgGCGCCcaACCCGCcgaacagGCCg -3' miRNA: 3'- aGGCGGG-G-CGCGGugUGGGCGaa-----CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 33634 | 0.72 | 0.229869 |
Target: 5'- aCCGCCCaCGcCGCCAgCGCCCGg--GUCg -3' miRNA: 3'- aGGCGGG-GC-GCGGU-GUGGGCgaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 73069 | 0.71 | 0.235347 |
Target: 5'- -aUGCCCC-CGCCACACCCccucgucccugGCgcGCCg -3' miRNA: 3'- agGCGGGGcGCGGUGUGGG-----------CGaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 53646 | 0.71 | 0.237569 |
Target: 5'- gUCCGCCCaggcuccggcauugaCGuCGCCG-GCCUGCUUGUCg -3' miRNA: 3'- -AGGCGGG---------------GC-GCGGUgUGGGCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 25433 | 0.71 | 0.240935 |
Target: 5'- aUCCGCCgaaCGCGCCGgGgCCGCUgaauCCa -3' miRNA: 3'- -AGGCGGg--GCGCGGUgUgGGCGAac--GG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 33925 | 0.71 | 0.245484 |
Target: 5'- gCCGCCaCCaggaGCGCCAUugCCGCcggacugaaagGCCg -3' miRNA: 3'- aGGCGG-GG----CGCGGUGugGGCGaa---------CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 81165 | 0.7 | 0.276807 |
Target: 5'- gCCGCUCUGCGCguCgagcucggcaGCCUGCgUGCCa -3' miRNA: 3'- aGGCGGGGCGCGguG----------UGGGCGaACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 67718 | 0.7 | 0.283185 |
Target: 5'- gCCGCgucguaCUCGCGCUcgGCCCGCUUGUa -3' miRNA: 3'- aGGCG------GGGCGCGGugUGGGCGAACGg -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 96610 | 0.7 | 0.291649 |
Target: 5'- cCCGCCCggacucgaaccgagaCGCGCCGaaauuacCGCCgGCUgcucUGCCa -3' miRNA: 3'- aGGCGGG---------------GCGCGGU-------GUGGgCGA----ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 20848 | 0.7 | 0.303014 |
Target: 5'- cCUGCaggCCGCGCCaguccGCACCCucGCggUGCCa -3' miRNA: 3'- aGGCGg--GGCGCGG-----UGUGGG--CGa-ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 41949 | 0.7 | 0.303014 |
Target: 5'- cCCGCCuuGCggGCCuuguCCCGgUUGCCc -3' miRNA: 3'- aGGCGGggCG--CGGugu-GGGCgAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 68648 | 0.69 | 0.316817 |
Target: 5'- gCUGCCuCUGCGUCuauccgauaGCCgCGCUUGCCc -3' miRNA: 3'- aGGCGG-GGCGCGGug-------UGG-GCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 98127 | 0.69 | 0.321759 |
Target: 5'- -gCGCCCCcucuuucgggcggGCGUCGCACCCcggauucgcacaCUUGCCg -3' miRNA: 3'- agGCGGGG-------------CGCGGUGUGGGc-----------GAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 59968 | 0.69 | 0.323894 |
Target: 5'- -gUGCCaCCGCGCCggcgaccaaGCGCCCGgUUGgCu -3' miRNA: 3'- agGCGG-GGCGCGG---------UGUGGGCgAACgG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 9474 | 0.69 | 0.323894 |
Target: 5'- aUCCGCCUCGCGCUggaggaagucaAC-CuuGCgcaUGCCc -3' miRNA: 3'- -AGGCGGGGCGCGG-----------UGuGggCGa--ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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