miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20407 5' -63.5 NC_004688.1 + 59311 0.66 0.517002
Target:  5'- cCUGCCCgaCGCgaugGCCGcCGCCgGCUacgGCCg -3'
miRNA:   3'- aGGCGGG--GCG----CGGU-GUGGgCGAa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 67718 0.7 0.283185
Target:  5'- gCCGCgucguaCUCGCGCUcgGCCCGCUUGUa -3'
miRNA:   3'- aGGCG------GGGCGCGGugUGGGCGAACGg -5'
20407 5' -63.5 NC_004688.1 + 96610 0.7 0.291649
Target:  5'- cCCGCCCggacucgaaccgagaCGCGCCGaaauuacCGCCgGCUgcucUGCCa -3'
miRNA:   3'- aGGCGGG---------------GCGCGGU-------GUGGgCGA----ACGG- -5'
20407 5' -63.5 NC_004688.1 + 20848 0.7 0.303014
Target:  5'- cCUGCaggCCGCGCCaguccGCACCCucGCggUGCCa -3'
miRNA:   3'- aGGCGg--GGCGCGG-----UGUGGG--CGa-ACGG- -5'
20407 5' -63.5 NC_004688.1 + 41949 0.7 0.303014
Target:  5'- cCCGCCuuGCggGCCuuguCCCGgUUGCCc -3'
miRNA:   3'- aGGCGGggCG--CGGugu-GGGCgAACGG- -5'
20407 5' -63.5 NC_004688.1 + 68648 0.69 0.316817
Target:  5'- gCUGCCuCUGCGUCuauccgauaGCCgCGCUUGCCc -3'
miRNA:   3'- aGGCGG-GGCGCGGug-------UGG-GCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 98127 0.69 0.321759
Target:  5'- -gCGCCCCcucuuucgggcggGCGUCGCACCCcggauucgcacaCUUGCCg -3'
miRNA:   3'- agGCGGGG-------------CGCGGUGUGGGc-----------GAACGG- -5'
20407 5' -63.5 NC_004688.1 + 85286 0.69 0.323894
Target:  5'- uUCCGCCUCG-GCCu--CCCGCa-GCCu -3'
miRNA:   3'- -AGGCGGGGCgCGGuguGGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 59968 0.69 0.323894
Target:  5'- -gUGCCaCCGCGCCggcgaccaaGCGCCCGgUUGgCu -3'
miRNA:   3'- agGCGG-GGCGCGG---------UGUGGGCgAACgG- -5'
20407 5' -63.5 NC_004688.1 + 81165 0.7 0.276807
Target:  5'- gCCGCUCUGCGCguCgagcucggcaGCCUGCgUGCCa -3'
miRNA:   3'- aGGCGGGGCGCGguG----------UGGGCGaACGG- -5'
20407 5' -63.5 NC_004688.1 + 33925 0.71 0.245484
Target:  5'- gCCGCCaCCaggaGCGCCAUugCCGCcggacugaaagGCCg -3'
miRNA:   3'- aGGCGG-GG----CGCGGUGugGGCGaa---------CGG- -5'
20407 5' -63.5 NC_004688.1 + 25433 0.71 0.240935
Target:  5'- aUCCGCCgaaCGCGCCGgGgCCGCUgaauCCa -3'
miRNA:   3'- -AGGCGGg--GCGCGGUgUgGGCGAac--GG- -5'
20407 5' -63.5 NC_004688.1 + 58506 0.74 0.148501
Target:  5'- -gUGCCCUGCGCCGCagguuuucugGCCCaGCUcgGCCa -3'
miRNA:   3'- agGCGGGGCGCGGUG----------UGGG-CGAa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 68394 0.74 0.159956
Target:  5'- gUCCaGCaCUCGCcaggcgagGCCAUACCCGCUaccUGCCa -3'
miRNA:   3'- -AGG-CG-GGGCG--------CGGUGUGGGCGA---ACGG- -5'
20407 5' -63.5 NC_004688.1 + 26354 0.74 0.163949
Target:  5'- cCCGCgCCCaugGCGCCcuggauggcaGCGCCCGCaagGCCa -3'
miRNA:   3'- aGGCG-GGG---CGCGG----------UGUGGGCGaa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 5946 0.73 0.199226
Target:  5'- -aUGCUcuCCGCGCCguGCGCCUGCUUGgCCu -3'
miRNA:   3'- agGCGG--GGCGCGG--UGUGGGCGAAC-GG- -5'
20407 5' -63.5 NC_004688.1 + 26115 0.72 0.214078
Target:  5'- aCCGCCCgCgGCGCCcaACCCGCcgaacagGCCg -3'
miRNA:   3'- aGGCGGG-G-CGCGGugUGGGCGaa-----CGG- -5'
20407 5' -63.5 NC_004688.1 + 33634 0.72 0.229869
Target:  5'- aCCGCCCaCGcCGCCAgCGCCCGg--GUCg -3'
miRNA:   3'- aGGCGGG-GC-GCGGU-GUGGGCgaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 73069 0.71 0.235347
Target:  5'- -aUGCCCC-CGCCACACCCccucgucccugGCgcGCCg -3'
miRNA:   3'- agGCGGGGcGCGGUGUGGG-----------CGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 53646 0.71 0.237569
Target:  5'- gUCCGCCCaggcuccggcauugaCGuCGCCG-GCCUGCUUGUCg -3'
miRNA:   3'- -AGGCGGG---------------GC-GCGGUgUGGGCGAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.