miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20407 5' -63.5 NC_004688.1 + 1957 0.68 0.368806
Target:  5'- -aUGCCCCG-GCCAgAgCCGCg-GCCg -3'
miRNA:   3'- agGCGGGGCgCGGUgUgGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 2140 1.11 0.0003
Target:  5'- cUCCGCCCCGCGCCACACCCGCUUGCCg -3'
miRNA:   3'- -AGGCGGGGCGCGGUGUGGGCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 5257 0.67 0.443746
Target:  5'- -gCGCCCCGCauuggugucGCCGuCGCCCaGCcaguaGCCg -3'
miRNA:   3'- agGCGGGGCG---------CGGU-GUGGG-CGaa---CGG- -5'
20407 5' -63.5 NC_004688.1 + 5946 0.73 0.199226
Target:  5'- -aUGCUcuCCGCGCCguGCGCCUGCUUGgCCu -3'
miRNA:   3'- agGCGG--GGCGCGG--UGUGGGCGAAC-GG- -5'
20407 5' -63.5 NC_004688.1 + 9474 0.69 0.323894
Target:  5'- aUCCGCCUCGCGCUggaggaagucaAC-CuuGCgcaUGCCc -3'
miRNA:   3'- -AGGCGGGGCGCGG-----------UGuGggCGa--ACGG- -5'
20407 5' -63.5 NC_004688.1 + 9822 0.68 0.401034
Target:  5'- -aCGUCCgCGgGCC-CGCCCGgaUGUCg -3'
miRNA:   3'- agGCGGG-GCgCGGuGUGGGCgaACGG- -5'
20407 5' -63.5 NC_004688.1 + 15745 0.68 0.368806
Target:  5'- cCCGCCCCGUcaaCCAaacuucaCCGCUcgGCCa -3'
miRNA:   3'- aGGCGGGGCGc--GGUgug----GGCGAa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 20848 0.7 0.303014
Target:  5'- cCUGCaggCCGCGCCaguccGCACCCucGCggUGCCa -3'
miRNA:   3'- aGGCGg--GGCGCGG-----UGUGGG--CGa-ACGG- -5'
20407 5' -63.5 NC_004688.1 + 22879 0.66 0.470568
Target:  5'- gCCGCCgCgGCGCC-UACCC-CUaccGCCg -3'
miRNA:   3'- aGGCGG-GgCGCGGuGUGGGcGAa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 22959 0.67 0.434998
Target:  5'- -aCGCCaCCGaugGCCGCACCaGCgcGCCc -3'
miRNA:   3'- agGCGG-GGCg--CGGUGUGGgCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 23335 0.66 0.507559
Target:  5'- uUCCGUUcaUCGCGCCGgcgaUGCCCGUggucaGCCg -3'
miRNA:   3'- -AGGCGG--GGCGCGGU----GUGGGCGaa---CGG- -5'
20407 5' -63.5 NC_004688.1 + 23984 0.68 0.361032
Target:  5'- gCCGCCa-GCGCCccggagAUGCCCGCcccgGCCu -3'
miRNA:   3'- aGGCGGggCGCGG------UGUGGGCGaa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 24821 0.68 0.39281
Target:  5'- gUCCGCCaaGCcgGCUAgGCCgCGCgagaUGCCg -3'
miRNA:   3'- -AGGCGGggCG--CGGUgUGG-GCGa---ACGG- -5'
20407 5' -63.5 NC_004688.1 + 25203 0.66 0.506619
Target:  5'- uUCUGCCCCGUaGCCuugucggGCACCaugauguccaGCgcGCCg -3'
miRNA:   3'- -AGGCGGGGCG-CGG-------UGUGGg---------CGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 25433 0.71 0.240935
Target:  5'- aUCCGCCgaaCGCGCCGgGgCCGCUgaauCCa -3'
miRNA:   3'- -AGGCGGg--GCGCGGUgUgGGCGAac--GG- -5'
20407 5' -63.5 NC_004688.1 + 25747 0.67 0.461534
Target:  5'- gUUCGCCCCGCcgggGCCGC-CuuGgggGCCg -3'
miRNA:   3'- -AGGCGGGGCG----CGGUGuGggCgaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 26000 0.67 0.417806
Target:  5'- gUCCGCCU---GCCAUACCCccggGCaUGCCg -3'
miRNA:   3'- -AGGCGGGgcgCGGUGUGGG----CGaACGG- -5'
20407 5' -63.5 NC_004688.1 + 26115 0.72 0.214078
Target:  5'- aCCGCCCgCgGCGCCcaACCCGCcgaacagGCCg -3'
miRNA:   3'- aGGCGGG-G-CGCGGugUGGGCGaa-----CGG- -5'
20407 5' -63.5 NC_004688.1 + 26228 0.68 0.39281
Target:  5'- cCCGCCUCGagGCCGCcaACagCGCcUGCCg -3'
miRNA:   3'- aGGCGGGGCg-CGGUG--UGg-GCGaACGG- -5'
20407 5' -63.5 NC_004688.1 + 26354 0.74 0.163949
Target:  5'- cCCGCgCCCaugGCGCCcuggauggcaGCGCCCGCaagGCCa -3'
miRNA:   3'- aGGCG-GGG---CGCGG----------UGUGGGCGaa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.