miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20407 5' -63.5 NC_004688.1 + 109849 0.69 0.337664
Target:  5'- aUCGCCaUCGUGCCcaucgucGCACUguugaCGCUUGCCg -3'
miRNA:   3'- aGGCGG-GGCGCGG-------UGUGG-----GCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 102947 0.66 0.4889
Target:  5'- gCCGCCauCCGCGCCGCcgaggAUCgGCUagaGCUa -3'
miRNA:   3'- aGGCGG--GGCGCGGUG-----UGGgCGAa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 102774 0.67 0.452592
Target:  5'- --aGCgUCCGCGCCAgugGCCCGUUUGgCa -3'
miRNA:   3'- aggCG-GGGCGCGGUg--UGGGCGAACgG- -5'
20407 5' -63.5 NC_004688.1 + 100545 0.67 0.42635
Target:  5'- gCC-CCCCGCGCCGgccgccgaACCCGa--GCCc -3'
miRNA:   3'- aGGcGGGGCGCGGUg-------UGGGCgaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 98127 0.69 0.321759
Target:  5'- -gCGCCCCcucuuucgggcggGCGUCGCACCCcggauucgcacaCUUGCCg -3'
miRNA:   3'- agGCGGGG-------------CGCGGUGUGGGc-----------GAACGG- -5'
20407 5' -63.5 NC_004688.1 + 97915 0.67 0.452592
Target:  5'- -aCGCaCUCcCGCCGC-CCCGCgcggGCCu -3'
miRNA:   3'- agGCG-GGGcGCGGUGuGGGCGaa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 96610 0.7 0.291649
Target:  5'- cCCGCCCggacucgaaccgagaCGCGCCGaaauuacCGCCgGCUgcucUGCCa -3'
miRNA:   3'- aGGCGGG---------------GCGCGGU-------GUGGgCGA----ACGG- -5'
20407 5' -63.5 NC_004688.1 + 94806 0.66 0.479691
Target:  5'- cUCGCCCggaGCGCCACAaugacaaaCCGUaucGCCc -3'
miRNA:   3'- aGGCGGGg--CGCGGUGUg-------GGCGaa-CGG- -5'
20407 5' -63.5 NC_004688.1 + 92027 0.68 0.390364
Target:  5'- gCCGCCCCaugccugaccacgaGgGCgggCAUACCCaGCUUGUCa -3'
miRNA:   3'- aGGCGGGG--------------CgCG---GUGUGGG-CGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 87983 0.66 0.517002
Target:  5'- cUCGCCCUcguccaauGCcCCACcCCCGCUaGCUa -3'
miRNA:   3'- aGGCGGGG--------CGcGGUGuGGGCGAaCGG- -5'
20407 5' -63.5 NC_004688.1 + 86718 0.68 0.376695
Target:  5'- gUCUGCCCCGgGCUuccguacuGCGCCCugaugacgaaGCccGCCa -3'
miRNA:   3'- -AGGCGGGGCgCGG--------UGUGGG----------CGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 85560 0.67 0.417806
Target:  5'- uUCCGCCCauagagGCgGCCAUGCCC-CUUaCCg -3'
miRNA:   3'- -AGGCGGGg-----CG-CGGUGUGGGcGAAcGG- -5'
20407 5' -63.5 NC_004688.1 + 85286 0.69 0.323894
Target:  5'- uUCCGCCUCG-GCCu--CCCGCa-GCCu -3'
miRNA:   3'- -AGGCGGGGCgCGGuguGGGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 81756 0.66 0.507559
Target:  5'- gCCGCgCCGgGCCuaucGCACCCGacccaagGCa -3'
miRNA:   3'- aGGCGgGGCgCGG----UGUGGGCgaa----CGg -5'
20407 5' -63.5 NC_004688.1 + 81165 0.7 0.276807
Target:  5'- gCCGCUCUGCGCguCgagcucggcaGCCUGCgUGCCa -3'
miRNA:   3'- aGGCGGGGCGCGguG----------UGGGCGaACGG- -5'
20407 5' -63.5 NC_004688.1 + 81035 0.68 0.361032
Target:  5'- gCCGCCaCCGUGCC-CACgagagGCUUGCg -3'
miRNA:   3'- aGGCGG-GGCGCGGuGUGgg---CGAACGg -5'
20407 5' -63.5 NC_004688.1 + 80179 0.66 0.507559
Target:  5'- -gCGCugggCUCGCGCC-CACCCGUUcGCa -3'
miRNA:   3'- agGCG----GGGCGCGGuGUGGGCGAaCGg -5'
20407 5' -63.5 NC_004688.1 + 79781 0.66 0.507559
Target:  5'- gCCGCCauGCgGCgACGCCUGCUuaaugacccUGUCg -3'
miRNA:   3'- aGGCGGggCG-CGgUGUGGGCGA---------ACGG- -5'
20407 5' -63.5 NC_004688.1 + 77684 0.66 0.487975
Target:  5'- cCCGCCCCaGCGCUugucgcaGCGCgCGCauccaaaUGUCa -3'
miRNA:   3'- aGGCGGGG-CGCGG-------UGUGgGCGa------ACGG- -5'
20407 5' -63.5 NC_004688.1 + 76502 0.67 0.443746
Target:  5'- cUCGCCCauaaaggucuCGUGCCACAgCCCGUUauCCg -3'
miRNA:   3'- aGGCGGG----------GCGCGGUGU-GGGCGAacGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.