Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20411 | 3' | -53 | NC_004688.1 | + | 34377 | 0.66 | 0.958836 |
Target: 5'- gCGGAccGGugaucugcaacAUCAcucccGGCUGGCCGGuCUCCg -3' miRNA: 3'- -GCUUuuCC-----------UAGU-----CCGGCCGGUU-GAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 59163 | 0.68 | 0.888299 |
Target: 5'- gCGAcGAGGAagacgacgggCAGGCUGGCUAGgUuCCg -3' miRNA: 3'- -GCUuUUCCUa---------GUCCGGCCGGUUgA-GG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 99841 | 0.68 | 0.895245 |
Target: 5'- gCGAcc-GGAUCGGGCaaGuCCAGCUUCa -3' miRNA: 3'- -GCUuuuCCUAGUCCGgcC-GGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 101732 | 0.68 | 0.901944 |
Target: 5'- gCGAGcaguuuGGA-CAGGCgCGGUCAACUUUg -3' miRNA: 3'- -GCUUuu----CCUaGUCCG-GCCGGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 56478 | 0.68 | 0.901944 |
Target: 5'- ----cAGGGUCAGGgCGcGCCGgcgaaGCUCUa -3' miRNA: 3'- gcuuuUCCUAGUCCgGC-CGGU-----UGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 98798 | 0.67 | 0.908392 |
Target: 5'- gCGggGGGcGGgccagCGGGCUGGCUGACgcgCUg -3' miRNA: 3'- -GCuuUUC-CUa----GUCCGGCCGGUUGa--GG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 60001 | 0.67 | 0.908392 |
Target: 5'- uCGAAGAGGAU---GCCcaGCCAGCUCg -3' miRNA: 3'- -GCUUUUCCUAgucCGGc-CGGUUGAGg -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 11178 | 0.67 | 0.908392 |
Target: 5'- ----cAGGGUCGGGUCGGUCAcgaCCg -3' miRNA: 3'- gcuuuUCCUAGUCCGGCCGGUugaGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 75593 | 0.67 | 0.908392 |
Target: 5'- gCGAcgGGGuGUC-GGCCGccGCgGACUCCu -3' miRNA: 3'- -GCUuuUCC-UAGuCCGGC--CGgUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 55907 | 0.68 | 0.88111 |
Target: 5'- cCGAGcauGAGGuugCAGGCCGGgCAuaaaaUCCc -3' miRNA: 3'- -GCUU---UUCCua-GUCCGGCCgGUug---AGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 86586 | 0.68 | 0.873682 |
Target: 5'- -----cGGGUacCGGaGCCacGGCCAGCUCCa -3' miRNA: 3'- gcuuuuCCUA--GUC-CGG--CCGGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 9062 | 0.68 | 0.871409 |
Target: 5'- cCGGAAGGGAgcgCAGGCCgacgcugguggucgGGUUGGCgCCg -3' miRNA: 3'- -GCUUUUCCUa--GUCCGG--------------CCGGUUGaGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 23151 | 0.75 | 0.529158 |
Target: 5'- aGAGAGGGAUUggaGGGCCucGGCgAACUUCu -3' miRNA: 3'- gCUUUUCCUAG---UCCGG--CCGgUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 62777 | 0.75 | 0.529158 |
Target: 5'- gCGggGAGGAaccgacacUCGGcuagaacaaGCCGGCuCGACUCCc -3' miRNA: 3'- -GCuuUUCCU--------AGUC---------CGGCCG-GUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 54078 | 0.73 | 0.644693 |
Target: 5'- gGAGGAGcGUCAGGCCcucaaagcGGCCcauCUCCg -3' miRNA: 3'- gCUUUUCcUAGUCCGG--------CCGGuu-GAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 3416 | 0.71 | 0.748696 |
Target: 5'- aGguGAGGGUUAGGUCGGCa---UCCu -3' miRNA: 3'- gCuuUUCCUAGUCCGGCCGguugAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 33949 | 0.7 | 0.787784 |
Target: 5'- -----cGGGUCGGGCCGGaagaacacCCAGCcgCCa -3' miRNA: 3'- gcuuuuCCUAGUCCGGCC--------GGUUGa-GG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 64927 | 0.7 | 0.803703 |
Target: 5'- gGAAGuucgGGGcGUCgAGGCCGGUCAuugcucagccaccaGCUCCu -3' miRNA: 3'- gCUUU----UCC-UAG-UCCGGCCGGU--------------UGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 6522 | 0.7 | 0.815552 |
Target: 5'- gCGGuAGAGGAUCAGggcgcgagcGCCGGCgAGgUCUg -3' miRNA: 3'- -GCU-UUUCCUAGUC---------CGGCCGgUUgAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 101400 | 0.69 | 0.858135 |
Target: 5'- aCGcAGAGGGAUCGGuG-CGGCCcuacGCUCUg -3' miRNA: 3'- -GC-UUUUCCUAGUC-CgGCCGGu---UGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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