miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20411 3' -53 NC_004688.1 + 2174 0.66 0.954924
Target:  5'- aGAGAuggccaagugcGGGGUUGGcGCUGGCgAuCUCCg -3'
miRNA:   3'- gCUUU-----------UCCUAGUC-CGGCCGgUuGAGG- -5'
20411 3' -53 NC_004688.1 + 3216 0.66 0.941707
Target:  5'- uCGccAAGGAUgcugccgugCAGGuCCGGCCA-CUCa -3'
miRNA:   3'- -GCuuUUCCUA---------GUCC-GGCCGGUuGAGg -5'
20411 3' -53 NC_004688.1 + 3416 0.71 0.748696
Target:  5'- aGguGAGGGUUAGGUCGGCa---UCCu -3'
miRNA:   3'- gCuuUUCCUAGUCCGGCCGguugAGG- -5'
20411 3' -53 NC_004688.1 + 4798 1.13 0.002083
Target:  5'- cCGAAAAGGAUCAGGCCGGCCAACUCCa -3'
miRNA:   3'- -GCUUUUCCUAGUCCGGCCGGUUGAGG- -5'
20411 3' -53 NC_004688.1 + 6522 0.7 0.815552
Target:  5'- gCGGuAGAGGAUCAGggcgcgagcGCCGGCgAGgUCUg -3'
miRNA:   3'- -GCU-UUUCCUAGUC---------CGGCCGgUUgAGG- -5'
20411 3' -53 NC_004688.1 + 9062 0.68 0.871409
Target:  5'- cCGGAAGGGAgcgCAGGCCgacgcugguggucgGGUUGGCgCCg -3'
miRNA:   3'- -GCUUUUCCUa--GUCCGG--------------CCGGUUGaGG- -5'
20411 3' -53 NC_004688.1 + 11178 0.67 0.908392
Target:  5'- ----cAGGGUCGGGUCGGUCAcgaCCg -3'
miRNA:   3'- gcuuuUCCUAGUCCGGCCGGUugaGG- -5'
20411 3' -53 NC_004688.1 + 12903 0.66 0.941707
Target:  5'- cCGAGAAGucUC-GGCCGGgCAgguGCUCUu -3'
miRNA:   3'- -GCUUUUCcuAGuCCGGCCgGU---UGAGG- -5'
20411 3' -53 NC_004688.1 + 20864 0.66 0.950768
Target:  5'- gCGAAcagcGGGuaacccugCAGGCCGcGCCAG-UCCg -3'
miRNA:   3'- -GCUUu---UCCua------GUCCGGC-CGGUUgAGG- -5'
20411 3' -53 NC_004688.1 + 23151 0.75 0.529158
Target:  5'- aGAGAGGGAUUggaGGGCCucGGCgAACUUCu -3'
miRNA:   3'- gCUUUUCCUAG---UCCGG--CCGgUUGAGG- -5'
20411 3' -53 NC_004688.1 + 27642 0.67 0.920524
Target:  5'- cCGGAuAGcGGUCGGGCCG-CCAAacaCCu -3'
miRNA:   3'- -GCUUuUC-CUAGUCCGGCcGGUUga-GG- -5'
20411 3' -53 NC_004688.1 + 29534 0.66 0.936797
Target:  5'- gCGcAGAGug-CGGGCCacgucgucgaGGCCAAUUCCg -3'
miRNA:   3'- -GCuUUUCcuaGUCCGG----------CCGGUUGAGG- -5'
20411 3' -53 NC_004688.1 + 29697 0.66 0.954924
Target:  5'- cCGGcuGGGGAUCAcccGGCCG-CCAcaACUUCa -3'
miRNA:   3'- -GCUu-UUCCUAGU---CCGGCcGGU--UGAGG- -5'
20411 3' -53 NC_004688.1 + 31293 0.67 0.93163
Target:  5'- cCGGAGgcGGGGucguUCAGGCgGGCaauCAGgUCCa -3'
miRNA:   3'- -GCUUU--UCCU----AGUCCGgCCG---GUUgAGG- -5'
20411 3' -53 NC_004688.1 + 33949 0.7 0.787784
Target:  5'- -----cGGGUCGGGCCGGaagaacacCCAGCcgCCa -3'
miRNA:   3'- gcuuuuCCUAGUCCGGCC--------GGUUGa-GG- -5'
20411 3' -53 NC_004688.1 + 34377 0.66 0.958836
Target:  5'- gCGGAccGGugaucugcaacAUCAcucccGGCUGGCCGGuCUCCg -3'
miRNA:   3'- -GCUUuuCC-----------UAGU-----CCGGCCGGUU-GAGG- -5'
20411 3' -53 NC_004688.1 + 41786 0.66 0.950768
Target:  5'- uGggGuccuccGGGAUCGGGCUG-CCGuCUUCg -3'
miRNA:   3'- gCuuU------UCCUAGUCCGGCcGGUuGAGG- -5'
20411 3' -53 NC_004688.1 + 46210 0.66 0.958836
Target:  5'- uCGAuuGGGAUuacugcagCAGccccaCCGGCCAGCugUCCg -3'
miRNA:   3'- -GCUuuUCCUA--------GUCc----GGCCGGUUG--AGG- -5'
20411 3' -53 NC_004688.1 + 54078 0.73 0.644693
Target:  5'- gGAGGAGcGUCAGGCCcucaaagcGGCCcauCUCCg -3'
miRNA:   3'- gCUUUUCcUAGUCCGG--------CCGGuu-GAGG- -5'
20411 3' -53 NC_004688.1 + 55907 0.68 0.88111
Target:  5'- cCGAGcauGAGGuugCAGGCCGGgCAuaaaaUCCc -3'
miRNA:   3'- -GCUU---UUCCua-GUCCGGCCgGUug---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.