Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20411 | 3' | -53 | NC_004688.1 | + | 102366 | 0.66 | 0.954924 |
Target: 5'- gCGGAGcAGG-UguGGCCGGUCuACUgCg -3' miRNA: 3'- -GCUUU-UCCuAguCCGGCCGGuUGAgG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 101732 | 0.68 | 0.901944 |
Target: 5'- gCGAGcaguuuGGA-CAGGCgCGGUCAACUUUg -3' miRNA: 3'- -GCUUuu----CCUaGUCCG-GCCGGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 101400 | 0.69 | 0.858135 |
Target: 5'- aCGcAGAGGGAUCGGuG-CGGCCcuacGCUCUg -3' miRNA: 3'- -GC-UUUUCCUAGUC-CgGCCGGu---UGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 99841 | 0.68 | 0.895245 |
Target: 5'- gCGAcc-GGAUCGGGCaaGuCCAGCUUCa -3' miRNA: 3'- -GCUuuuCCUAGUCCGgcC-GGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 98798 | 0.67 | 0.908392 |
Target: 5'- gCGggGGGcGGgccagCGGGCUGGCUGACgcgCUg -3' miRNA: 3'- -GCuuUUC-CUa----GUCCGGCCGGUUGa--GG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 96346 | 0.67 | 0.920524 |
Target: 5'- uGGAGAGGuccagaaGGGgCGcGCCAACcUCCg -3' miRNA: 3'- gCUUUUCCuag----UCCgGC-CGGUUG-AGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 86586 | 0.68 | 0.873682 |
Target: 5'- -----cGGGUacCGGaGCCacGGCCAGCUCCa -3' miRNA: 3'- gcuuuuCCUA--GUC-CGG--CCGGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 75593 | 0.67 | 0.908392 |
Target: 5'- gCGAcgGGGuGUC-GGCCGccGCgGACUCCu -3' miRNA: 3'- -GCUuuUCC-UAGuCCGGC--CGgUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 75450 | 0.66 | 0.936797 |
Target: 5'- cCGGAAAGG-UgGGGCCcGUCGAaUCCg -3' miRNA: 3'- -GCUUUUCCuAgUCCGGcCGGUUgAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 75348 | 0.67 | 0.93163 |
Target: 5'- gCGAGAAGGAUguugccgaucgcCAGGUCGucGCCA--UCCu -3' miRNA: 3'- -GCUUUUCCUA------------GUCCGGC--CGGUugAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 75102 | 0.66 | 0.950768 |
Target: 5'- aCGAAAuGGAaCGGGgUGGCgAccucgcGCUCCg -3' miRNA: 3'- -GCUUUuCCUaGUCCgGCCGgU------UGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 74550 | 0.66 | 0.941707 |
Target: 5'- uGAAGGGGAuUUGGGCCacauccgucacgGGCC--CUCCu -3' miRNA: 3'- gCUUUUCCU-AGUCCGG------------CCGGuuGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 73853 | 0.66 | 0.958836 |
Target: 5'- uCGggGAGGAUCgcauacuuaccGGG--GGCUAAUUCCc -3' miRNA: 3'- -GCuuUUCCUAG-----------UCCggCCGGUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 73547 | 0.66 | 0.958836 |
Target: 5'- aGGccAGGGGGUCcGGCCaGCCgAGCUUUg -3' miRNA: 3'- gCU--UUUCCUAGuCCGGcCGG-UUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 69711 | 0.66 | 0.95452 |
Target: 5'- gGAGuGGGAguUCAccaggguGGCagCGGCCuGCUCCg -3' miRNA: 3'- gCUUuUCCU--AGU-------CCG--GCCGGuUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 66616 | 0.66 | 0.958836 |
Target: 5'- aGAGAGuGuGUCgGGGUCGGCCAcgaAUUCCu -3' miRNA: 3'- gCUUUU-CcUAG-UCCGGCCGGU---UGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 64927 | 0.7 | 0.803703 |
Target: 5'- gGAAGuucgGGGcGUCgAGGCCGGUCAuugcucagccaccaGCUCCu -3' miRNA: 3'- gCUUU----UCC-UAG-UCCGGCCGGU--------------UGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 62777 | 0.75 | 0.529158 |
Target: 5'- gCGggGAGGAaccgacacUCGGcuagaacaaGCCGGCuCGACUCCc -3' miRNA: 3'- -GCuuUUCCU--------AGUC---------CGGCCG-GUUGAGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 61173 | 0.67 | 0.914586 |
Target: 5'- cCGGAGGGuGUCGuGGUCGcGCCGGC-CCa -3' miRNA: 3'- -GCUUUUCcUAGU-CCGGC-CGGUUGaGG- -5' |
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20411 | 3' | -53 | NC_004688.1 | + | 60474 | 0.66 | 0.95452 |
Target: 5'- uCGAAucccucuGGGGAUUcgGGGUCGGCgAcguaguuccagGCUCCu -3' miRNA: 3'- -GCUU-------UUCCUAG--UCCGGCCGgU-----------UGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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