miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20415 5' -59.9 NC_004688.1 + 37084 0.66 0.692905
Target:  5'- cGCCauGGCGGcCCAUgugCCCGAcgagcuuGUCGCc -3'
miRNA:   3'- -CGGcuCCGCCaGGUG---GGGCUu------CAGCG- -5'
20415 5' -59.9 NC_004688.1 + 31635 0.66 0.692905
Target:  5'- gGCCGAGGUcuuGGgcgCCucCCCCGugguGGggggCGCc -3'
miRNA:   3'- -CGGCUCCG---CCa--GGu-GGGGCu---UCa---GCG- -5'
20415 5' -59.9 NC_004688.1 + 43881 0.66 0.692905
Target:  5'- aGCuCGcGcGCGaGaUCCGCCCCGAAGcCGg -3'
miRNA:   3'- -CG-GCuC-CGC-C-AGGUGGGGCUUCaGCg -5'
20415 5' -59.9 NC_004688.1 + 9582 0.66 0.682993
Target:  5'- cGCCGcgguguAGGCcucGGUugCCGCCCgGAGGUCu- -3'
miRNA:   3'- -CGGC------UCCG---CCA--GGUGGGgCUUCAGcg -5'
20415 5' -59.9 NC_004688.1 + 39986 0.66 0.67304
Target:  5'- uGuuGuGGC-GUCCGCCgCCGcAGUgGCg -3'
miRNA:   3'- -CggCuCCGcCAGGUGG-GGCuUCAgCG- -5'
20415 5' -59.9 NC_004688.1 + 4890 0.66 0.67304
Target:  5'- cGCCcauGGUGGUCCACCCgCGc--UCGg -3'
miRNA:   3'- -CGGcu-CCGCCAGGUGGG-GCuucAGCg -5'
20415 5' -59.9 NC_004688.1 + 9748 0.66 0.66905
Target:  5'- uGCCGAGGagugcuucgacuuCGGcgacggucaguucgUCgGCCUCGggGUCGa -3'
miRNA:   3'- -CGGCUCC-------------GCC--------------AGgUGGGGCuuCAGCg -5'
20415 5' -59.9 NC_004688.1 + 43137 0.67 0.663055
Target:  5'- uGUCGAGGCGGUuauuggugggaUCGCCaUCGuuGUgGCa -3'
miRNA:   3'- -CGGCUCCGCCA-----------GGUGG-GGCuuCAgCG- -5'
20415 5' -59.9 NC_004688.1 + 7726 0.67 0.653046
Target:  5'- cGUCGAuGCGGUagaCCGgCUCGAuccAGUCGCc -3'
miRNA:   3'- -CGGCUcCGCCA---GGUgGGGCU---UCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 91493 0.67 0.643021
Target:  5'- uCCGAGGCGGgu-GCCgCGGAuGUCGa -3'
miRNA:   3'- cGGCUCCGCCaggUGGgGCUU-CAGCg -5'
20415 5' -59.9 NC_004688.1 + 20311 0.67 0.643021
Target:  5'- uGCCGAGGC---CgACCgCGggGUCGg -3'
miRNA:   3'- -CGGCUCCGccaGgUGGgGCuuCAGCg -5'
20415 5' -59.9 NC_004688.1 + 73355 0.67 0.643021
Target:  5'- uGCCGAGGCGcucggCCaaguggacgACCgUGAAGcCGCg -3'
miRNA:   3'- -CGGCUCCGCca---GG---------UGGgGCUUCaGCG- -5'
20415 5' -59.9 NC_004688.1 + 8831 0.67 0.643021
Target:  5'- uGUCGAGGCGGgCCACgaccuucaggCCCuu-GUCGUc -3'
miRNA:   3'- -CGGCUCCGCCaGGUG----------GGGcuuCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 4749 0.67 0.622954
Target:  5'- uGCCGuucuGGCGGgacaCCACCaggCCGAAGgaggaggcCGCc -3'
miRNA:   3'- -CGGCu---CCGCCa---GGUGG---GGCUUCa-------GCG- -5'
20415 5' -59.9 NC_004688.1 + 30777 0.67 0.619945
Target:  5'- aGCCGcccucGGGCgucagaacaagauaGG-CCACCCCGguGUCGg -3'
miRNA:   3'- -CGGC-----UCCG--------------CCaGGUGGGGCuuCAGCg -5'
20415 5' -59.9 NC_004688.1 + 95522 0.67 0.612927
Target:  5'- uCCuAGGCGG-CCagggGCCgCCGGAGUgGCg -3'
miRNA:   3'- cGGcUCCGCCaGG----UGG-GGCUUCAgCG- -5'
20415 5' -59.9 NC_004688.1 + 22430 0.67 0.60892
Target:  5'- cGgCGAGGCGGauuUCCuCCCUGGucugcuuaugggcGUCGCu -3'
miRNA:   3'- -CgGCUCCGCC---AGGuGGGGCUu------------CAGCG- -5'
20415 5' -59.9 NC_004688.1 + 94960 0.68 0.601914
Target:  5'- gGCCGGGGCauaaagaaugugGGUaCCcucgugGCCCUcuucaaggucgcaGAAGUCGCa -3'
miRNA:   3'- -CGGCUCCG------------CCA-GG------UGGGG-------------CUUCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 43538 0.68 0.601914
Target:  5'- cGCCGAGGgGGU-CGCCgCGAcgGGcuucccguuaaucUCGCg -3'
miRNA:   3'- -CGGCUCCgCCAgGUGGgGCU--UC-------------AGCG- -5'
20415 5' -59.9 NC_004688.1 + 28422 0.68 0.582957
Target:  5'- uGCCGGGGCcGUacaCCACCagguccgggaagCCGGgcuGGUCGCc -3'
miRNA:   3'- -CGGCUCCGcCA---GGUGG------------GGCU---UCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.