Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20421 | 3' | -54 | NC_004688.1 | + | 11273 | 1.11 | 0.002549 |
Target: 5'- gCGCGCAUACGCACGCUCGACUCGAACa -3' miRNA: 3'- -GCGCGUAUGCGUGCGAGCUGAGCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 101891 | 0.77 | 0.393516 |
Target: 5'- gCGCGCAUAC-CACGCcCGACUgGGAa -3' miRNA: 3'- -GCGCGUAUGcGUGCGaGCUGAgCUUg -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 103472 | 0.75 | 0.44788 |
Target: 5'- cCGCGaAUACGCGCGacagaUCGAgUCGGGCg -3' miRNA: 3'- -GCGCgUAUGCGUGCg----AGCUgAGCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 70217 | 0.75 | 0.496207 |
Target: 5'- aGCGCuccgccggGCGUGCGCUUGAUUCGAu- -3' miRNA: 3'- gCGCGua------UGCGUGCGAGCUGAGCUug -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 4068 | 0.73 | 0.567441 |
Target: 5'- cCGCgGCGUAgGCGCGCaUCGuCUCGAu- -3' miRNA: 3'- -GCG-CGUAUgCGUGCG-AGCuGAGCUug -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 31655 | 0.72 | 0.651525 |
Target: 5'- cCGCGCAggGCGgACaGCUCGGC-CGAGg -3' miRNA: 3'- -GCGCGUa-UGCgUG-CGAGCUGaGCUUg -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 62732 | 0.7 | 0.724343 |
Target: 5'- cCGCGacugGUGCGCACGCaagGAUUUGAACc -3' miRNA: 3'- -GCGCg---UAUGCGUGCGag-CUGAGCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 99608 | 0.7 | 0.764315 |
Target: 5'- gGCugGCGUGCGcCACGC-CGAgaaaCUCGGACu -3' miRNA: 3'- gCG--CGUAUGC-GUGCGaGCU----GAGCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 80226 | 0.69 | 0.802292 |
Target: 5'- uCG-GCGUACGCcCGCUuaucCGACUCGGc- -3' miRNA: 3'- -GCgCGUAUGCGuGCGA----GCUGAGCUug -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 36341 | 0.68 | 0.828224 |
Target: 5'- cCGCGCAaacuucgGCGCggccucgaaccccAgGCUCGGCgCGAACg -3' miRNA: 3'- -GCGCGUa------UGCG-------------UgCGAGCUGaGCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 20485 | 0.68 | 0.829091 |
Target: 5'- aGCGCAcg-GCGCGCUUG-CUCuGGGCg -3' miRNA: 3'- gCGCGUaugCGUGCGAGCuGAG-CUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 67717 | 0.68 | 0.837655 |
Target: 5'- cCGCGuCGUACuCGCGCUCGGCcCGc-- -3' miRNA: 3'- -GCGC-GUAUGcGUGCGAGCUGaGCuug -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 10541 | 0.68 | 0.837655 |
Target: 5'- -uCGCGUAgGUGCGCcCGGCgCGAGCg -3' miRNA: 3'- gcGCGUAUgCGUGCGaGCUGaGCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 106414 | 0.68 | 0.84602 |
Target: 5'- gCGCGCGUAUcgcuaGCGCGC-CGGCUagUGAGg -3' miRNA: 3'- -GCGCGUAUG-----CGUGCGaGCUGA--GCUUg -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 451 | 0.68 | 0.854179 |
Target: 5'- uCGCGCcUGCGguaGCGCUCucGCUCGcGCg -3' miRNA: 3'- -GCGCGuAUGCg--UGCGAGc-UGAGCuUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 51417 | 0.68 | 0.861339 |
Target: 5'- aGCGCGccaaggcUGCGCugG-UCGACUaCGAAg -3' miRNA: 3'- gCGCGU-------AUGCGugCgAGCUGA-GCUUg -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 83542 | 0.67 | 0.891639 |
Target: 5'- uCGCcCAUGCGaucgaGCUUGGCUCGcAGCg -3' miRNA: 3'- -GCGcGUAUGCgug--CGAGCUGAGC-UUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 100309 | 0.67 | 0.904964 |
Target: 5'- aCGaCGUAcucCGCACGUgccgCGACUgCGGACa -3' miRNA: 3'- -GC-GCGUau-GCGUGCGa---GCUGA-GCUUG- -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 105952 | 0.66 | 0.911255 |
Target: 5'- cCGCGCGacuUGCGCGaugaGCUgGACgcacgCGAGa -3' miRNA: 3'- -GCGCGU---AUGCGUg---CGAgCUGa----GCUUg -5' |
|||||||
20421 | 3' | -54 | NC_004688.1 | + | 5939 | 0.66 | 0.911255 |
Target: 5'- cCGCGcCGUGCGCcUGCUUGGcCUUGuACu -3' miRNA: 3'- -GCGC-GUAUGCGuGCGAGCU-GAGCuUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home