miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20438 5' -58.4 NC_004688.1 + 39173 0.66 0.724546
Target:  5'- cGGCGgcGCUGGACCCguugGCcCCGGCAccGCc -3'
miRNA:   3'- -UCGCa-CGGUUUGGGa---CGcGGUCGU--CG- -5'
20438 5' -58.4 NC_004688.1 + 38919 0.66 0.724546
Target:  5'- cAGCGcccCCGGACaCCUGCGuacugcuaCCGGaCAGCg -3'
miRNA:   3'- -UCGCac-GGUUUG-GGACGC--------GGUC-GUCG- -5'
20438 5' -58.4 NC_004688.1 + 58941 0.66 0.718492
Target:  5'- cGgGUGCgAuggaugaccugguCCCUGCGCUGGgAGCu -3'
miRNA:   3'- uCgCACGgUuu-----------GGGACGCGGUCgUCG- -5'
20438 5' -58.4 NC_004688.1 + 18861 0.66 0.714441
Target:  5'- gGGUGUGgCAcGCCCgucuguUGCGCCAagacgccCAGCa -3'
miRNA:   3'- -UCGCACgGUuUGGG------ACGCGGUc------GUCG- -5'
20438 5' -58.4 NC_004688.1 + 65890 0.66 0.714441
Target:  5'- cGGUGgGUCuuuaaGGGCCCcGCGCCAagucGCGGCg -3'
miRNA:   3'- -UCGCaCGG-----UUUGGGaCGCGGU----CGUCG- -5'
20438 5' -58.4 NC_004688.1 + 62994 0.66 0.704265
Target:  5'- cGGCGaUGCCGAuguggaaguCCUcgGCGC-GGCGGCg -3'
miRNA:   3'- -UCGC-ACGGUUu--------GGGa-CGCGgUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 30812 0.66 0.704265
Target:  5'- gGGUGUGCC-AGCCgaGaagaaCGGCAGCu -3'
miRNA:   3'- -UCGCACGGuUUGGgaCgcg--GUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 80973 0.66 0.694025
Target:  5'- cGCuGUGCCccauCCCUGCcacuGCUucGCAGCu -3'
miRNA:   3'- uCG-CACGGuuu-GGGACG----CGGu-CGUCG- -5'
20438 5' -58.4 NC_004688.1 + 41598 0.66 0.694025
Target:  5'- uGGUGgaacGCCAGuuucGCCgCUGCGUUGGCGGg -3'
miRNA:   3'- -UCGCa---CGGUU----UGG-GACGCGGUCGUCg -5'
20438 5' -58.4 NC_004688.1 + 28745 0.66 0.683731
Target:  5'- cGGCGUGCCAucgAGgCC-GCGCgCAGggacCGGCu -3'
miRNA:   3'- -UCGCACGGU---UUgGGaCGCG-GUC----GUCG- -5'
20438 5' -58.4 NC_004688.1 + 59972 0.66 0.683731
Target:  5'- gAGgGUGCCA---CC-GCGCCGGCgaccaAGCg -3'
miRNA:   3'- -UCgCACGGUuugGGaCGCGGUCG-----UCG- -5'
20438 5' -58.4 NC_004688.1 + 62013 0.66 0.682699
Target:  5'- uGcCGUGCCGGAagugcuuCCUguauUGCGCCGGCGucccGCa -3'
miRNA:   3'- uC-GCACGGUUU-------GGG----ACGCGGUCGU----CG- -5'
20438 5' -58.4 NC_004688.1 + 71556 0.66 0.6796
Target:  5'- gGGUGUGCCcaucucguuuuCCCaGCGCUGGUAGa -3'
miRNA:   3'- -UCGCACGGuuu--------GGGaCGCGGUCGUCg -5'
20438 5' -58.4 NC_004688.1 + 24310 0.67 0.66302
Target:  5'- uGCGgaGCCcacggaggaAGGCCC-GCGUCAGCAGg -3'
miRNA:   3'- uCGCa-CGG---------UUUGGGaCGCGGUCGUCg -5'
20438 5' -58.4 NC_004688.1 + 102797 0.67 0.661981
Target:  5'- uGGCG-GCgCAcuuCCCUgacuacagcguccGCGCCAGUGGCc -3'
miRNA:   3'- -UCGCaCG-GUuu-GGGA-------------CGCGGUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 65706 0.67 0.652621
Target:  5'- gGGCaacGCCGGggucGCCCgGCGCCuagcuuGCGGCc -3'
miRNA:   3'- -UCGca-CGGUU----UGGGaCGCGGu-----CGUCG- -5'
20438 5' -58.4 NC_004688.1 + 92989 0.67 0.642206
Target:  5'- aGGCGccGgCGAAUCCgGCGCacacCAGCGGCu -3'
miRNA:   3'- -UCGCa-CgGUUUGGGaCGCG----GUCGUCG- -5'
20438 5' -58.4 NC_004688.1 + 100549 0.67 0.642206
Target:  5'- uGCG-GCC---CCCcGCGCCGGCcGCc -3'
miRNA:   3'- uCGCaCGGuuuGGGaCGCGGUCGuCG- -5'
20438 5' -58.4 NC_004688.1 + 19059 0.67 0.631782
Target:  5'- gGGCGUGUUcgGCCCcaugGCGaUCGGCuGCc -3'
miRNA:   3'- -UCGCACGGuuUGGGa---CGC-GGUCGuCG- -5'
20438 5' -58.4 NC_004688.1 + 46760 0.67 0.631782
Target:  5'- cGCGggaucGCCcggcGGGCCCUGauCGCCGGC-GCg -3'
miRNA:   3'- uCGCa----CGG----UUUGGGAC--GCGGUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.