miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20450 3' -57.6 NC_004688.1 + 39161 0.66 0.799352
Target:  5'- --aCC-CGUUggCCCCggCACCG-CCCCg -3'
miRNA:   3'- uuaGGcGCAAuaGGGG--GUGGCuGGGG- -5'
20450 3' -57.6 NC_004688.1 + 88278 0.66 0.799352
Target:  5'- --cCCGaauGUUcccAUCCCCCACau-CCCCg -3'
miRNA:   3'- uuaGGCg--CAA---UAGGGGGUGgcuGGGG- -5'
20450 3' -57.6 NC_004688.1 + 11881 0.66 0.790247
Target:  5'- -cUCgGUGUUgugAUCCUCgACCcACCCCg -3'
miRNA:   3'- uuAGgCGCAA---UAGGGGgUGGcUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 77900 0.66 0.780996
Target:  5'- gAAUUCGgGcaUAUCCCCCGCCaggGACCa- -3'
miRNA:   3'- -UUAGGCgCa-AUAGGGGGUGG---CUGGgg -5'
20450 3' -57.6 NC_004688.1 + 70066 0.66 0.762098
Target:  5'- cAUCCcCGUgg-CCUCCACCGAUUCg -3'
miRNA:   3'- uUAGGcGCAauaGGGGGUGGCUGGGg -5'
20450 3' -57.6 NC_004688.1 + 75067 0.67 0.752469
Target:  5'- -uUCCGCGgacuUAUCCCaguaggugaugCCGCC-ACCCUu -3'
miRNA:   3'- uuAGGCGCa---AUAGGG-----------GGUGGcUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 35005 0.67 0.742732
Target:  5'- --aUCGCGUUGUCCCgCAaCGcCUCCg -3'
miRNA:   3'- uuaGGCGCAAUAGGGgGUgGCuGGGG- -5'
20450 3' -57.6 NC_004688.1 + 64184 0.67 0.742732
Target:  5'- --aCCagGCGgugaaCCCCCGCCGACCa- -3'
miRNA:   3'- uuaGG--CGCaaua-GGGGGUGGCUGGgg -5'
20450 3' -57.6 NC_004688.1 + 35780 0.67 0.732898
Target:  5'- ---aCGaCGacg-CCCCC-CCGGCCCCg -3'
miRNA:   3'- uuagGC-GCaauaGGGGGuGGCUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 81054 0.67 0.712972
Target:  5'- --aCCGUGcuccaggacaUUcgCCgCCACCGugCCCa -3'
miRNA:   3'- uuaGGCGC----------AAuaGGgGGUGGCugGGG- -5'
20450 3' -57.6 NC_004688.1 + 99725 0.67 0.7029
Target:  5'- --cCCGUacaacggUAUCCCCCACCuuCUCCa -3'
miRNA:   3'- uuaGGCGca-----AUAGGGGGUGGcuGGGG- -5'
20450 3' -57.6 NC_004688.1 + 94017 0.68 0.692767
Target:  5'- --cCCGUGgccggauucAUCCCCCGCC-ACCUCu -3'
miRNA:   3'- uuaGGCGCaa-------UAGGGGGUGGcUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 32456 0.68 0.682583
Target:  5'- -cUCgGCGUcAUCCCaCCAgaaCGugCCCg -3'
miRNA:   3'- uuAGgCGCAaUAGGG-GGUg--GCugGGG- -5'
20450 3' -57.6 NC_004688.1 + 14745 0.68 0.641513
Target:  5'- --gUCGCcaUAUCCCCCG-CGACaCCCa -3'
miRNA:   3'- uuaGGCGcaAUAGGGGGUgGCUG-GGG- -5'
20450 3' -57.6 NC_004688.1 + 35469 0.69 0.628113
Target:  5'- --cCCGCGcgGUCCCacgCCACCaccgcgaacaccguGGCCCCc -3'
miRNA:   3'- uuaGGCGCaaUAGGG---GGUGG--------------CUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 46762 0.69 0.620899
Target:  5'- --cUCGCGggAUCgCCCgGCgGGCCCUg -3'
miRNA:   3'- uuaGGCGCaaUAG-GGGgUGgCUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 21645 0.69 0.590061
Target:  5'- gGAUCUG-GUUGgagcgCCCgCCGCCGGCCUUg -3'
miRNA:   3'- -UUAGGCgCAAUa----GGG-GGUGGCUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 25326 0.69 0.579834
Target:  5'- -uUCUGCGUUgggcugccgcgGUCCUCCAUcgggCGACCCUc -3'
miRNA:   3'- uuAGGCGCAA-----------UAGGGGGUG----GCUGGGG- -5'
20450 3' -57.6 NC_004688.1 + 75576 0.69 0.579834
Target:  5'- --gCCGCGgacUCCUCCgGCUGACCCg -3'
miRNA:   3'- uuaGGCGCaauAGGGGG-UGGCUGGGg -5'
20450 3' -57.6 NC_004688.1 + 100551 0.7 0.569645
Target:  5'- --aCUGCGg---CCCCCcgcGCCGGCCgCCg -3'
miRNA:   3'- uuaGGCGCaauaGGGGG---UGGCUGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.