miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20455 3' -59.1 NC_004688.1 + 1842 0.66 0.685261
Target:  5'- cGCGguucGCGCCAaGCUUGGUGGCggCGGCg -3'
miRNA:   3'- -UGC----UGUGGUgCGGGUCGCCGuaGCUG- -5'
20455 3' -59.1 NC_004688.1 + 3077 0.72 0.369095
Target:  5'- cACG-CGCCACcCCCGGCGGCGaUGAg -3'
miRNA:   3'- -UGCuGUGGUGcGGGUCGCCGUaGCUg -5'
20455 3' -59.1 NC_004688.1 + 6978 0.69 0.542685
Target:  5'- gGCGugcuuCAgCAgCGCCCAGCGGCccaaugUGACg -3'
miRNA:   3'- -UGCu----GUgGU-GCGGGUCGCCGua----GCUG- -5'
20455 3' -59.1 NC_004688.1 + 10376 0.66 0.695383
Target:  5'- gGCGGCGCagGCGCUCcuuGGcCGGCucGUCGGCc -3'
miRNA:   3'- -UGCUGUGg-UGCGGG---UC-GCCG--UAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 13077 0.66 0.685261
Target:  5'- aGCGGCGCCgugACGUgugaUCGGUGGCGUCuccgugGACa -3'
miRNA:   3'- -UGCUGUGG---UGCG----GGUCGCCGUAG------CUG- -5'
20455 3' -59.1 NC_004688.1 + 14162 0.66 0.695383
Target:  5'- aGCGAUACU-CGCCguagcGCGGC-UCGGCg -3'
miRNA:   3'- -UGCUGUGGuGCGGgu---CGCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 14849 0.81 0.10241
Target:  5'- uCGACACCcaaggcagacGCGCCCGGCGGCAUuaaaccucgCGACu -3'
miRNA:   3'- uGCUGUGG----------UGCGGGUCGCCGUA---------GCUG- -5'
20455 3' -59.1 NC_004688.1 + 15211 0.72 0.377259
Target:  5'- aACGGCGCCGCGCCgCGGCacaugaaaGGUGUCcagGGCa -3'
miRNA:   3'- -UGCUGUGGUGCGG-GUCG--------CCGUAG---CUG- -5'
20455 3' -59.1 NC_004688.1 + 15402 0.66 0.685261
Target:  5'- -gGAuCACCGCGCaaaaaGGCAUCGGCu -3'
miRNA:   3'- ugCU-GUGGUGCGggucgCCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 17643 0.66 0.703443
Target:  5'- uCGugGCCcauucgggcgaGCUCGGCGGCAacaucgUCGGCg -3'
miRNA:   3'- uGCugUGGug---------CGGGUCGCCGU------AGCUG- -5'
20455 3' -59.1 NC_004688.1 + 17744 0.67 0.613654
Target:  5'- cGCGGCG--GCGCUUaggAGCGGCuUCGACg -3'
miRNA:   3'- -UGCUGUggUGCGGG---UCGCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 28735 0.66 0.675095
Target:  5'- uCGAgGCCGCGCgCAGggacCGGCuUUGACc -3'
miRNA:   3'- uGCUgUGGUGCGgGUC----GCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 32980 1.08 0.001115
Target:  5'- cACGACACCACGCCCAGCGGCAUCGACu -3'
miRNA:   3'- -UGCUGUGGUGCGGGUCGCCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 33351 0.67 0.623905
Target:  5'- cACGGCACauCGCCCgAGCGGguCAcCGACg -3'
miRNA:   3'- -UGCUGUGguGCGGG-UCGCC--GUaGCUG- -5'
20455 3' -59.1 NC_004688.1 + 33579 0.66 0.715459
Target:  5'- uGCu-CACCGCGCaCCcauguGGUGGCGUUGAa -3'
miRNA:   3'- -UGcuGUGGUGCG-GG-----UCGCCGUAGCUg -5'
20455 3' -59.1 NC_004688.1 + 34956 0.7 0.484102
Target:  5'- uCGuCGCCAgCGcCCCGGCaGCGUCGAg -3'
miRNA:   3'- uGCuGUGGU-GC-GGGUCGcCGUAGCUg -5'
20455 3' -59.1 NC_004688.1 + 36278 0.67 0.644418
Target:  5'- -aGACugCGCGC---GCGGCGUCGGg -3'
miRNA:   3'- ugCUGugGUGCGgguCGCCGUAGCUg -5'
20455 3' -59.1 NC_004688.1 + 38683 0.65 0.724404
Target:  5'- cCGcCGCCGcCGCCgCGGCGGUagguaucAUCGAa -3'
miRNA:   3'- uGCuGUGGU-GCGG-GUCGCCG-------UAGCUg -5'
20455 3' -59.1 NC_004688.1 + 41182 0.67 0.634163
Target:  5'- uCGACAUCcagguuguggACGCCCGGCaGCuuGUCGAg -3'
miRNA:   3'- uGCUGUGG----------UGCGGGUCGcCG--UAGCUg -5'
20455 3' -59.1 NC_004688.1 + 44345 0.66 0.685261
Target:  5'- uCGGCACCGaccgggGCCgCAGCguagaggucgccGGCGUUGGCg -3'
miRNA:   3'- uGCUGUGGUg-----CGG-GUCG------------CCGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.