miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20455 3' -59.1 NC_004688.1 + 38683 0.65 0.724404
Target:  5'- cCGcCGCCGcCGCCgCGGCGGUagguaucAUCGAa -3'
miRNA:   3'- uGCuGUGGU-GCGG-GUCGCCG-------UAGCUg -5'
20455 3' -59.1 NC_004688.1 + 6978 0.69 0.542685
Target:  5'- gGCGugcuuCAgCAgCGCCCAGCGGCccaaugUGACg -3'
miRNA:   3'- -UGCu----GUgGU-GCGGGUCGCCGua----GCUG- -5'
20455 3' -59.1 NC_004688.1 + 71247 0.68 0.552691
Target:  5'- gGCGAUuucCCGgGCCCGGCGGC-UCu-- -3'
miRNA:   3'- -UGCUGu--GGUgCGGGUCGCCGuAGcug -5'
20455 3' -59.1 NC_004688.1 + 73139 0.68 0.572862
Target:  5'- -aGACGCguugaGCGCUCAcccCGGCAUCGGCc -3'
miRNA:   3'- ugCUGUGg----UGCGGGUc--GCCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 82544 0.68 0.572862
Target:  5'- gACGAguuuCCACGCuauCCAGCGGCGgcugcCGAUg -3'
miRNA:   3'- -UGCUgu--GGUGCG---GGUCGCCGUa----GCUG- -5'
20455 3' -59.1 NC_004688.1 + 17744 0.67 0.613654
Target:  5'- cGCGGCG--GCGCUUaggAGCGGCuUCGACg -3'
miRNA:   3'- -UGCUGUggUGCGGG---UCGCCGuAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 69416 0.67 0.623905
Target:  5'- cACGcACGCCGuCGCCaCAGa-GCAUCGAa -3'
miRNA:   3'- -UGC-UGUGGU-GCGG-GUCgcCGUAGCUg -5'
20455 3' -59.1 NC_004688.1 + 33351 0.67 0.623905
Target:  5'- cACGGCACauCGCCCgAGCGGguCAcCGACg -3'
miRNA:   3'- -UGCUGUGguGCGGG-UCGCC--GUaGCUG- -5'
20455 3' -59.1 NC_004688.1 + 44489 0.67 0.623905
Target:  5'- aGCGGaACCACcuGCgaCAGCGGCAUCGu- -3'
miRNA:   3'- -UGCUgUGGUG--CGg-GUCGCCGUAGCug -5'
20455 3' -59.1 NC_004688.1 + 97381 0.69 0.51305
Target:  5'- uACGACGCCG-GCaCCAGCGcGCc-CGACu -3'
miRNA:   3'- -UGCUGUGGUgCG-GGUCGC-CGuaGCUG- -5'
20455 3' -59.1 NC_004688.1 + 34956 0.7 0.484102
Target:  5'- uCGuCGCCAgCGcCCCGGCaGCGUCGAg -3'
miRNA:   3'- uGCuGUGGU-GC-GGGUCGcCGUAGCUg -5'
20455 3' -59.1 NC_004688.1 + 79858 0.7 0.45596
Target:  5'- aGCGACACCcacggGCGCCCGuCGGCcgaGUgGGCc -3'
miRNA:   3'- -UGCUGUGG-----UGCGGGUcGCCG---UAgCUG- -5'
20455 3' -59.1 NC_004688.1 + 14849 0.81 0.10241
Target:  5'- uCGACACCcaaggcagacGCGCCCGGCGGCAUuaaaccucgCGACu -3'
miRNA:   3'- uGCUGUGG----------UGCGGGUCGCCGUA---------GCUG- -5'
20455 3' -59.1 NC_004688.1 + 55813 0.78 0.151387
Target:  5'- -gGGCGCCGCGaCCGGCGGCuagCGGCg -3'
miRNA:   3'- ugCUGUGGUGCgGGUCGCCGua-GCUG- -5'
20455 3' -59.1 NC_004688.1 + 73496 0.76 0.21537
Target:  5'- uGC-ACGCCGCGCCCuGCGGCGg-GGCa -3'
miRNA:   3'- -UGcUGUGGUGCGGGuCGCCGUagCUG- -5'
20455 3' -59.1 NC_004688.1 + 48987 0.72 0.33539
Target:  5'- uGCGAguCgGcCGCCCAGCucguggagaugcucGGCGUCGACg -3'
miRNA:   3'- -UGCUguGgU-GCGGGUCG--------------CCGUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 3077 0.72 0.369095
Target:  5'- cACG-CGCCACcCCCGGCGGCGaUGAg -3'
miRNA:   3'- -UGCuGUGGUGcGGGUCGCCGUaGCUg -5'
20455 3' -59.1 NC_004688.1 + 15211 0.72 0.377259
Target:  5'- aACGGCGCCGCGCCgCGGCacaugaaaGGUGUCcagGGCa -3'
miRNA:   3'- -UGCUGUGGUGCGG-GUCG--------CCGUAG---CUG- -5'
20455 3' -59.1 NC_004688.1 + 73589 0.71 0.428723
Target:  5'- uGCGGgGCCGgGCCC-GCGGguCAUCGAUc -3'
miRNA:   3'- -UGCUgUGGUgCGGGuCGCC--GUAGCUG- -5'
20455 3' -59.1 NC_004688.1 + 68210 0.7 0.437697
Target:  5'- cCGGCACCcCuCCCAGCGGCGgaGAUg -3'
miRNA:   3'- uGCUGUGGuGcGGGUCGCCGUagCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.