miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20462 3' -58.3 NC_004688.1 + 25048 0.68 0.659706
Target:  5'- --aGCCGCCAUCGCGAcuggggaaggccucCACCaggGGCa -3'
miRNA:   3'- gugCGGUGGUGGCGCUu-------------GUGGca-CCG- -5'
20462 3' -58.3 NC_004688.1 + 25801 0.71 0.466864
Target:  5'- gAUGCCGCCACCcCGGGCGaaGUcgGGCu -3'
miRNA:   3'- gUGCGGUGGUGGcGCUUGUggCA--CCG- -5'
20462 3' -58.3 NC_004688.1 + 26067 0.68 0.625
Target:  5'- --aGCCgcACCGCC-CGcAGCACCGggGGCa -3'
miRNA:   3'- gugCGG--UGGUGGcGC-UUGUGGCa-CCG- -5'
20462 3' -58.3 NC_004688.1 + 26133 0.72 0.404209
Target:  5'- uGCGCCACCuGCCGCuc-CACCGcccgcGGCg -3'
miRNA:   3'- gUGCGGUGG-UGGCGcuuGUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 26208 0.66 0.764696
Target:  5'- aGCGCCuGCCGCaGCaccugccGCACCG-GGCa -3'
miRNA:   3'- gUGCGG-UGGUGgCGcu-----UGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 26328 0.67 0.70619
Target:  5'- aGCGCCcgcaagGCCACCG---ACGCCGaGGCc -3'
miRNA:   3'- gUGCGG------UGGUGGCgcuUGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 26398 0.68 0.635215
Target:  5'- -cCGCCGCCgagGCCGCcgGAGCuGCCGgaccGGCc -3'
miRNA:   3'- guGCGGUGG---UGGCG--CUUG-UGGCa---CCG- -5'
20462 3' -58.3 NC_004688.1 + 27893 0.67 0.686091
Target:  5'- gGCGaacCCGUCGCCGUGGuccugACCGUGGCg -3'
miRNA:   3'- gUGC---GGUGGUGGCGCUug---UGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 31408 0.72 0.412834
Target:  5'- gGCaGCaUugC-CCGCGGACACCGuUGGCa -3'
miRNA:   3'- gUG-CG-GugGuGGCGCUUGUGGC-ACCG- -5'
20462 3' -58.3 NC_004688.1 + 31622 0.7 0.544082
Target:  5'- gGCGCCuCCcCCGUGGugggggGCGCCGaagaUGGCg -3'
miRNA:   3'- gUGCGGuGGuGGCGCU------UGUGGC----ACCG- -5'
20462 3' -58.3 NC_004688.1 + 31732 0.66 0.764696
Target:  5'- aCGCGCUACCcagACCGggcaGAaacACGCCGguuaaGGCu -3'
miRNA:   3'- -GUGCGGUGG---UGGCg---CU---UGUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 32582 0.7 0.534169
Target:  5'- -cUGCaCGCCGCCGCGGAucgccgacacCACCGUGuCa -3'
miRNA:   3'- guGCG-GUGGUGGCGCUU----------GUGGCACcG- -5'
20462 3' -58.3 NC_004688.1 + 33455 0.73 0.354924
Target:  5'- uCAC-CCAgUucggaACCGgGAACACCGUGGCc -3'
miRNA:   3'- -GUGcGGUgG-----UGGCgCUUGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 33861 0.8 0.127651
Target:  5'- -cCGgCACCACCaGCGGgcGCGCCGUGGCc -3'
miRNA:   3'- guGCgGUGGUGG-CGCU--UGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 35458 1.1 0.00115
Target:  5'- cCACGCCACCACCGCGAACACCGUGGCc -3'
miRNA:   3'- -GUGCGGUGGUGGCGCUUGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 35742 0.67 0.724067
Target:  5'- aGCGUCACC-CCGCucgguaccguCACCGacUGGCu -3'
miRNA:   3'- gUGCGGUGGuGGCGcuu-------GUGGC--ACCG- -5'
20462 3' -58.3 NC_004688.1 + 35918 0.67 0.71615
Target:  5'- cCAUGCCAgCCcacuuauucgGCCGCGA-CGagGUGGCg -3'
miRNA:   3'- -GUGCGGU-GG----------UGGCGCUuGUggCACCG- -5'
20462 3' -58.3 NC_004688.1 + 36208 0.66 0.75135
Target:  5'- aACGCCGCCggaccacGCaucgcgauauacggCGCGAACACCa-GGCc -3'
miRNA:   3'- gUGCGGUGG-------UG--------------GCGCUUGUGGcaCCG- -5'
20462 3' -58.3 NC_004688.1 + 36543 0.7 0.544082
Target:  5'- cCGCGUCgaacGCCACCGgGucAACACCGUcauugcccacGGCg -3'
miRNA:   3'- -GUGCGG----UGGUGGCgC--UUGUGGCA----------CCG- -5'
20462 3' -58.3 NC_004688.1 + 36812 0.67 0.71615
Target:  5'- aGCGCCcacCCACC-CGAA-GCCGgugGGCu -3'
miRNA:   3'- gUGCGGu--GGUGGcGCUUgUGGCa--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.