miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20462 3' -58.3 NC_004688.1 + 877 0.67 0.714163
Target:  5'- cCGCGCUgacgguuGCaCGCCGCGuggagcaGGCGgUGUGGCa -3'
miRNA:   3'- -GUGCGG-------UG-GUGGCGC-------UUGUgGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 1510 0.67 0.715157
Target:  5'- cCACGggucgggugagucCCACCAgUaCGGACAcuCCGUGGCg -3'
miRNA:   3'- -GUGC-------------GGUGGUgGcGCUUGU--GGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 2133 0.68 0.61479
Target:  5'- cCGCGCCACaC-CCGCu--UGCCGUcGGCa -3'
miRNA:   3'- -GUGCGGUG-GuGGCGcuuGUGGCA-CCG- -5'
20462 3' -58.3 NC_004688.1 + 4213 0.73 0.354924
Target:  5'- gACcUCAgCGCCGCGGGCGCCGaGGCc -3'
miRNA:   3'- gUGcGGUgGUGGCGCUUGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 10098 0.68 0.635215
Target:  5'- aGCGCgGCgCGCUcuucaGCcuuGGCGCCGUGGCg -3'
miRNA:   3'- gUGCGgUG-GUGG-----CGc--UUGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 11965 0.66 0.745566
Target:  5'- -gUGCCG-CACCGacggguaGGACACCGagcgGGCg -3'
miRNA:   3'- guGCGGUgGUGGCg------CUUGUGGCa---CCG- -5'
20462 3' -58.3 NC_004688.1 + 12355 0.75 0.26328
Target:  5'- -uCGCCACCcacuCUGCgGAGC-CCGUGGCg -3'
miRNA:   3'- guGCGGUGGu---GGCG-CUUGuGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 13180 0.67 0.686091
Target:  5'- gAUGCCGCCGuCCGCGAGCugGuuGUaGUa -3'
miRNA:   3'- gUGCGGUGGU-GGCGCUUG--UggCAcCG- -5'
20462 3' -58.3 NC_004688.1 + 13921 0.68 0.61377
Target:  5'- uCGCGCUccguaucguuggcGCUGCCGC--ACAgCGUGGCg -3'
miRNA:   3'- -GUGCGG-------------UGGUGGCGcuUGUgGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 16012 0.69 0.550059
Target:  5'- --gGCCGCUgaaGCUGCGAACGCCGaugcugauuacugGGCc -3'
miRNA:   3'- gugCGGUGG---UGGCGCUUGUGGCa------------CCG- -5'
20462 3' -58.3 NC_004688.1 + 16698 0.7 0.504838
Target:  5'- uGCGCCGCCcagcgcACUGCGGuaggguugggGCAUCGcGGCg -3'
miRNA:   3'- gUGCGGUGG------UGGCGCU----------UGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 17155 0.68 0.623979
Target:  5'- uUACGUCACCcgggacgGCgGUGAACACCucGUcGGCg -3'
miRNA:   3'- -GUGCGGUGG-------UGgCGCUUGUGG--CA-CCG- -5'
20462 3' -58.3 NC_004688.1 + 18085 0.67 0.695162
Target:  5'- cCGCGgCACCACCaGCcgcacuucuuauaGAGCAgCCG-GGCu -3'
miRNA:   3'- -GUGCgGUGGUGG-CG-------------CUUGU-GGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 18548 0.7 0.544082
Target:  5'- -cCGCCAUCACCGCcGGA-ACCGggGGUg -3'
miRNA:   3'- guGCGGUGGUGGCG-CUUgUGGCa-CCG- -5'
20462 3' -58.3 NC_004688.1 + 18610 0.67 0.70619
Target:  5'- cCGCGCC-CCGCCaGUGAucucguaggugACGCCGUcGUa -3'
miRNA:   3'- -GUGCGGuGGUGG-CGCU-----------UGUGGCAcCG- -5'
20462 3' -58.3 NC_004688.1 + 19095 0.66 0.77409
Target:  5'- cCGgGCCACgCGCUGCaugauuucGAAgGCCGgcgugGGCg -3'
miRNA:   3'- -GUgCGGUG-GUGGCG--------CUUgUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 20892 0.84 0.071454
Target:  5'- gGCGaCCGCaacgGCCGUGGGCGCCGUGGCg -3'
miRNA:   3'- gUGC-GGUGg---UGGCGCUUGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 21050 0.72 0.421571
Target:  5'- gACGCCGaaa-CGCGGAUcgugACCGUGGCa -3'
miRNA:   3'- gUGCGGUggugGCGCUUG----UGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 22886 0.72 0.392327
Target:  5'- cCAgGUCGCCGCCGCGGcgccuaccccuacCGCCGcGGCg -3'
miRNA:   3'- -GUgCGGUGGUGGCGCUu------------GUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 24874 0.68 0.61479
Target:  5'- aGCaUCGCCugCaGCGGA-GCCGUGGCg -3'
miRNA:   3'- gUGcGGUGGugG-CGCUUgUGGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.