miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20462 3' -58.3 NC_004688.1 + 51956 0.66 0.783358
Target:  5'- -cCGCCGCUGCUGCGGuuguaGCCGaGGg -3'
miRNA:   3'- guGCGGUGGUGGCGCUug---UGGCaCCg -5'
20462 3' -58.3 NC_004688.1 + 52736 0.73 0.37903
Target:  5'- cCGCGCCGau-CCGCGAAUGCUGggGGCc -3'
miRNA:   3'- -GUGCGGUgguGGCGCUUGUGGCa-CCG- -5'
20462 3' -58.3 NC_004688.1 + 22886 0.72 0.392327
Target:  5'- cCAgGUCGCCGCCGCGGcgccuaccccuacCGCCGcGGCg -3'
miRNA:   3'- -GUgCGGUGGUGGCGCUu------------GUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 26133 0.72 0.404209
Target:  5'- uGCGCCACCuGCCGCuc-CACCGcccgcGGCg -3'
miRNA:   3'- gUGCGGUGG-UGGCGcuuGUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 31408 0.72 0.412834
Target:  5'- gGCaGCaUugC-CCGCGGACACCGuUGGCa -3'
miRNA:   3'- gUG-CG-GugGuGGCGCUUGUGGC-ACCG- -5'
20462 3' -58.3 NC_004688.1 + 21050 0.72 0.421571
Target:  5'- gACGCCGaaa-CGCGGAUcgugACCGUGGCa -3'
miRNA:   3'- gUGCGGUggugGCGCUUG----UGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 100293 0.72 0.439375
Target:  5'- -gUGCCGCgACUGCGGACACaaGUGGg -3'
miRNA:   3'- guGCGGUGgUGGCGCUUGUGg-CACCg -5'
20462 3' -58.3 NC_004688.1 + 25801 0.71 0.466864
Target:  5'- gAUGCCGCCACCcCGGGCGaaGUcgGGCu -3'
miRNA:   3'- gUGCGGUGGUGGcGCUUGUggCA--CCG- -5'
20462 3' -58.3 NC_004688.1 + 38688 0.71 0.466864
Target:  5'- cCGCuCCGCCGCCGC---CGCCGcGGCg -3'
miRNA:   3'- -GUGcGGUGGUGGCGcuuGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 4213 0.73 0.354924
Target:  5'- gACcUCAgCGCCGCGGGCGCCGaGGCc -3'
miRNA:   3'- gUGcGGUgGUGGCGCUUGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 33455 0.73 0.354924
Target:  5'- uCAC-CCAgUucggaACCGgGAACACCGUGGCc -3'
miRNA:   3'- -GUGcGGUgG-----UGGCgCUUGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 63201 0.73 0.354924
Target:  5'- -cUGUCGCCACCGCGAcuGguCCGgGGCg -3'
miRNA:   3'- guGCGGUGGUGGCGCU--UguGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 20892 0.84 0.071454
Target:  5'- gGCGaCCGCaacgGCCGUGGGCGCCGUGGCg -3'
miRNA:   3'- gUGC-GGUGg---UGGCGCUUGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 33861 0.8 0.127651
Target:  5'- -cCGgCACCACCaGCGGgcGCGCCGUGGCc -3'
miRNA:   3'- guGCgGUGGUGG-CGCU--UGUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 41617 0.79 0.156789
Target:  5'- gGCGCCGCCGCC-CGG--ACCGUGGUg -3'
miRNA:   3'- gUGCGGUGGUGGcGCUugUGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 110711 0.79 0.160829
Target:  5'- gGCuGCUAgCACUGCGGGCGCgCGUGGCa -3'
miRNA:   3'- gUG-CGGUgGUGGCGCUUGUG-GCACCG- -5'
20462 3' -58.3 NC_004688.1 + 12355 0.75 0.26328
Target:  5'- -uCGCCACCcacuCUGCgGAGC-CCGUGGCg -3'
miRNA:   3'- guGCGGUGGu---GGCG-CUUGuGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 96717 0.75 0.289256
Target:  5'- cCACGCCuCgGCCGCGAuagGCACCcccGGCa -3'
miRNA:   3'- -GUGCGGuGgUGGCGCU---UGUGGca-CCG- -5'
20462 3' -58.3 NC_004688.1 + 58796 0.74 0.327452
Target:  5'- cCAuCGCCACCACCGCGgucucccgcauagaaGgagACACC-UGGCa -3'
miRNA:   3'- -GU-GCGGUGGUGGCGC---------------U---UGUGGcACCG- -5'
20462 3' -58.3 NC_004688.1 + 63887 0.74 0.331919
Target:  5'- aAgGCCgACCGCgGUGAAUGCgGUGGCa -3'
miRNA:   3'- gUgCGG-UGGUGgCGCUUGUGgCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.