Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20475 | 5' | -49.7 | NC_004688.1 | + | 3003 | 0.68 | 0.972715 |
Target: 5'- -gGCCucaucccACGUGAGGAaugcgcagUUGCCGGCg -3' miRNA: 3'- ggCGGcauu---UGCAUUCCU--------AACGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 3424 | 0.72 | 0.872559 |
Target: 5'- gCGCC-UGAAgGUGAGGGUuagGUCGGCa -3' miRNA: 3'- gGCGGcAUUUgCAUUCCUAa--CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 4004 | 0.68 | 0.980425 |
Target: 5'- aCCGCCGUccAGACGgc-GGcgUGCacgCGGCc -3' miRNA: 3'- -GGCGGCA--UUUGCauuCCuaACG---GCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 5497 | 0.67 | 0.987861 |
Target: 5'- gCCGCCGUcggaGUccaugaucccggcGAGGAggGCgCGACg -3' miRNA: 3'- -GGCGGCAuuugCA-------------UUCCUaaCG-GCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 9201 | 0.68 | 0.972715 |
Target: 5'- gCCGUCGgcGACGU--GGAUaUGCuCGAUg -3' miRNA: 3'- -GGCGGCauUUGCAuuCCUA-ACG-GCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 19882 | 0.7 | 0.946687 |
Target: 5'- uCCGCCGUucACGUAGGcGcccGCCGuCa -3' miRNA: 3'- -GGCGGCAuuUGCAUUC-CuaaCGGCuG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 21175 | 0.66 | 0.994736 |
Target: 5'- cCCGCCGcuuAugGguagaucaauuAGGAgagGCCGAUa -3' miRNA: 3'- -GGCGGCau-UugCau---------UCCUaa-CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 24218 | 0.7 | 0.941961 |
Target: 5'- uCCGUCGcgccCGUGGGGAccgUUGCCGGu -3' miRNA: 3'- -GGCGGCauuuGCAUUCCU---AACGGCUg -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 24857 | 0.7 | 0.931717 |
Target: 5'- -aGCCGU-GGCG--AGG-UUGCCGACg -3' miRNA: 3'- ggCGGCAuUUGCauUCCuAACGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 25245 | 0.67 | 0.9895 |
Target: 5'- gCGCCaUAGACGUuuGGAUcgcuaaggaccUGCUGAa -3' miRNA: 3'- gGCGGcAUUUGCAuuCCUA-----------ACGGCUg -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 25566 | 0.69 | 0.966486 |
Target: 5'- gCCGCCGcauucGCGaUGGGGGcguucaucUUGCCGAUc -3' miRNA: 3'- -GGCGGCauu--UGC-AUUCCU--------AACGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 26815 | 0.68 | 0.980425 |
Target: 5'- cCCGCCcagggGAACGUGAGcGGggGuuGAUg -3' miRNA: 3'- -GGCGGca---UUUGCAUUC-CUaaCggCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 28925 | 0.67 | 0.988018 |
Target: 5'- aCCGCCGUAuACGcauccuGGGAgaGCUuGGCc -3' miRNA: 3'- -GGCGGCAUuUGCau----UCCUaaCGG-CUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 35694 | 0.7 | 0.936972 |
Target: 5'- uUGCCGUgcgcGAACGUGGGGGUUcCCacgGACa -3' miRNA: 3'- gGCGGCA----UUUGCAUUCCUAAcGG---CUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 39256 | 0.69 | 0.966486 |
Target: 5'- aCCGCCGUGAcCGgu--GGUUGUgGACc -3' miRNA: 3'- -GGCGGCAUUuGCauucCUAACGgCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 41126 | 0.7 | 0.941961 |
Target: 5'- gCCGCCG--AAUGUcGGGAacagGCCGAUc -3' miRNA: 3'- -GGCGGCauUUGCAuUCCUaa--CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 41371 | 1.12 | 0.006457 |
Target: 5'- gCCGCCGUAAACGUAAGGAUUGCCGACc -3' miRNA: 3'- -GGCGGCAUUUGCAUUCCUAACGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 41989 | 0.74 | 0.803746 |
Target: 5'- gUCGCCGguccGGACGUAGuGGUaGCCGGCg -3' miRNA: 3'- -GGCGGCa---UUUGCAUUcCUAaCGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 44340 | 0.66 | 0.993102 |
Target: 5'- aCCGaCCGgggccgcAGCGUAGaGGUcGCCGGCg -3' miRNA: 3'- -GGC-GGCau-----UUGCAUUcCUAaCGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 48601 | 0.68 | 0.980425 |
Target: 5'- aCGuuGUacucGAACG--GGGA-UGCCGACg -3' miRNA: 3'- gGCggCA----UUUGCauUCCUaACGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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