miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20475 5' -49.7 NC_004688.1 + 83296 0.65 0.99557
Target:  5'- aCGgCGUAcccGGCacccucgaaugcgGUGcGGAUUGCCGACc -3'
miRNA:   3'- gGCgGCAU---UUG-------------CAUuCCUAACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 24218 0.7 0.941961
Target:  5'- uCCGUCGcgccCGUGGGGAccgUUGCCGGu -3'
miRNA:   3'- -GGCGGCauuuGCAUUCCU---AACGGCUg -5'
20475 5' -49.7 NC_004688.1 + 19882 0.7 0.946687
Target:  5'- uCCGCCGUucACGUAGGcGcccGCCGuCa -3'
miRNA:   3'- -GGCGGCAuuUGCAUUC-CuaaCGGCuG- -5'
20475 5' -49.7 NC_004688.1 + 110749 0.69 0.95536
Target:  5'- cCUGCgGUuuuGCGUuugcAAGGAUUaGCUGACg -3'
miRNA:   3'- -GGCGgCAuu-UGCA----UUCCUAA-CGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 54287 0.69 0.966486
Target:  5'- gCgGCCGgggaacaccaGGGCGUccGGAUUGgCCGGCa -3'
miRNA:   3'- -GgCGGCa---------UUUGCAuuCCUAAC-GGCUG- -5'
20475 5' -49.7 NC_004688.1 + 39256 0.69 0.966486
Target:  5'- aCCGCCGUGAcCGgu--GGUUGUgGACc -3'
miRNA:   3'- -GGCGGCAUUuGCauucCUAACGgCUG- -5'
20475 5' -49.7 NC_004688.1 + 25566 0.69 0.966486
Target:  5'- gCCGCCGcauucGCGaUGGGGGcguucaucUUGCCGAUc -3'
miRNA:   3'- -GGCGGCauu--UGC-AUUCCU--------AACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 3003 0.68 0.972715
Target:  5'- -gGCCucaucccACGUGAGGAaugcgcagUUGCCGGCg -3'
miRNA:   3'- ggCGGcauu---UGCAUUCCU--------AACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 9201 0.68 0.972715
Target:  5'- gCCGUCGgcGACGU--GGAUaUGCuCGAUg -3'
miRNA:   3'- -GGCGGCauUUGCAuuCCUA-ACG-GCUG- -5'
20475 5' -49.7 NC_004688.1 + 41126 0.7 0.941961
Target:  5'- gCCGCCG--AAUGUcGGGAacagGCCGAUc -3'
miRNA:   3'- -GGCGGCauUUGCAuUCCUaa--CGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 75354 0.7 0.941961
Target:  5'- gCGCCG---GCGagAAGGAUguUGCCGAUc -3'
miRNA:   3'- gGCGGCauuUGCa-UUCCUA--ACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 35694 0.7 0.936972
Target:  5'- uUGCCGUgcgcGAACGUGGGGGUUcCCacgGACa -3'
miRNA:   3'- gGCGGCA----UUUGCAUUCCUAAcGG---CUG- -5'
20475 5' -49.7 NC_004688.1 + 66995 0.75 0.734324
Target:  5'- cUCGUauuCGUAAACGUAgucGGGAUUGCCcGCg -3'
miRNA:   3'- -GGCG---GCAUUUGCAU---UCCUAACGGcUG- -5'
20475 5' -49.7 NC_004688.1 + 105744 0.75 0.744625
Target:  5'- aUCGCCGUAAAUGUGuGGAUggGUcaCGACg -3'
miRNA:   3'- -GGCGGCAUUUGCAUuCCUAa-CG--GCUG- -5'
20475 5' -49.7 NC_004688.1 + 41989 0.74 0.803746
Target:  5'- gUCGCCGguccGGACGUAGuGGUaGCCGGCg -3'
miRNA:   3'- -GGCGGCa---UUUGCAUUcCUAaCGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 108625 0.73 0.822176
Target:  5'- aCCGCCGUAggugggAACGaUGAGcGAgcaauucgGCCGACu -3'
miRNA:   3'- -GGCGGCAU------UUGC-AUUC-CUaa------CGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 3424 0.72 0.872559
Target:  5'- gCGCC-UGAAgGUGAGGGUuagGUCGGCa -3'
miRNA:   3'- gGCGGcAUUUgCAUUCCUAa--CGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 102832 0.72 0.887507
Target:  5'- aCCGCUGgcGAuCGUGAGcGcuAUUGCCGAa -3'
miRNA:   3'- -GGCGGCauUU-GCAUUC-C--UAACGGCUg -5'
20475 5' -49.7 NC_004688.1 + 68005 0.71 0.914352
Target:  5'- cCCGCUG-AAGCGUGAGcGAgaaGCCGcCa -3'
miRNA:   3'- -GGCGGCaUUUGCAUUC-CUaa-CGGCuG- -5'
20475 5' -49.7 NC_004688.1 + 24857 0.7 0.931717
Target:  5'- -aGCCGU-GGCG--AGG-UUGCCGACg -3'
miRNA:   3'- ggCGGCAuUUGCauUCCuAACGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.