miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20477 3' -61.4 NC_004688.1 + 74354 0.66 0.6693
Target:  5'- gCCGAugauGCCGucGGACUGGCGCCacgcuuucCCGa -3'
miRNA:   3'- -GGCUu---CGGC--CCUGGCCGUGGca------GGCc -5'
20477 3' -61.4 NC_004688.1 + 8470 0.66 0.659512
Target:  5'- gCCGAguucGGCUGGGGuuCUuGCGCCGguucuUCCGGc -3'
miRNA:   3'- -GGCU----UCGGCCCU--GGcCGUGGC-----AGGCC- -5'
20477 3' -61.4 NC_004688.1 + 25429 0.66 0.659512
Target:  5'- gCCGAAcgcGCCGGGGCCGcugaauccaGCuACgGgcgugCCGGu -3'
miRNA:   3'- -GGCUU---CGGCCCUGGC---------CG-UGgCa----GGCC- -5'
20477 3' -61.4 NC_004688.1 + 28476 0.66 0.649703
Target:  5'- -gGggGCCGaacucgaucgucGGAUUGGCGCCGggcCCGu -3'
miRNA:   3'- ggCuuCGGC------------CCUGGCCGUGGCa--GGCc -5'
20477 3' -61.4 NC_004688.1 + 30901 0.66 0.639882
Target:  5'- aCCGggGUCaccaccggguugGGGGUgGGCAgcggaUCGUCCGGg -3'
miRNA:   3'- -GGCuuCGG------------CCCUGgCCGU-----GGCAGGCC- -5'
20477 3' -61.4 NC_004688.1 + 91929 0.66 0.639882
Target:  5'- cCCGcgcGAGCCGGuGACCaGgACCc-CCGGg -3'
miRNA:   3'- -GGC---UUCGGCC-CUGGcCgUGGcaGGCC- -5'
20477 3' -61.4 NC_004688.1 + 28736 0.66 0.6389
Target:  5'- aUCGAGGCCgcgcgcaGGGACCGGCuuUGaCCa- -3'
miRNA:   3'- -GGCUUCGG-------CCCUGGCCGugGCaGGcc -5'
20477 3' -61.4 NC_004688.1 + 18874 0.66 0.630055
Target:  5'- gCCGGucuGGUaCGGGugUGGCAcgcCCGUCUGu -3'
miRNA:   3'- -GGCU---UCG-GCCCugGCCGU---GGCAGGCc -5'
20477 3' -61.4 NC_004688.1 + 27654 0.66 0.630055
Target:  5'- aUCGAAGCCGa-GCCGGauaGCgGUCgGGc -3'
miRNA:   3'- -GGCUUCGGCccUGGCCg--UGgCAGgCC- -5'
20477 3' -61.4 NC_004688.1 + 24218 0.66 0.630055
Target:  5'- uCCGucgcGCCcgugGGGACCGuuGCCGgugcCCGGg -3'
miRNA:   3'- -GGCuu--CGG----CCCUGGCcgUGGCa---GGCC- -5'
20477 3' -61.4 NC_004688.1 + 38981 0.67 0.610413
Target:  5'- cCCGGGcgcGCCGGGGauaacgaCGGCcCCGgcaaccCCGGa -3'
miRNA:   3'- -GGCUU---CGGCCCUg------GCCGuGGCa-----GGCC- -5'
20477 3' -61.4 NC_004688.1 + 18215 0.67 0.610413
Target:  5'- gCCGguGauGGGGCCcguGGCGCCGgugCCGa -3'
miRNA:   3'- -GGCuuCggCCCUGG---CCGUGGCa--GGCc -5'
20477 3' -61.4 NC_004688.1 + 27003 0.67 0.610413
Target:  5'- uCCGugaccCCGGGcCaCGGCGCCaGUCCGc -3'
miRNA:   3'- -GGCuuc--GGCCCuG-GCCGUGG-CAGGCc -5'
20477 3' -61.4 NC_004688.1 + 85272 0.67 0.600611
Target:  5'- cCCGcAGCCugauGGcGGCCaGCGCCGcCUGGu -3'
miRNA:   3'- -GGCuUCGG----CC-CUGGcCGUGGCaGGCC- -5'
20477 3' -61.4 NC_004688.1 + 6321 0.67 0.571359
Target:  5'- aCCcAGGCCGGGGuuGGCcAUCGcCCa- -3'
miRNA:   3'- -GGcUUCGGCCCUggCCG-UGGCaGGcc -5'
20477 3' -61.4 NC_004688.1 + 92192 0.68 0.539597
Target:  5'- uCCGcAGUCGGGAaugccaggcagacgUCGGCACCGagaUCCa- -3'
miRNA:   3'- -GGCuUCGGCCCU--------------GGCCGUGGC---AGGcc -5'
20477 3' -61.4 NC_004688.1 + 68841 0.68 0.522523
Target:  5'- aCCGGuccugaucgcauaGGCCGGGcgcCCGGCcUCGUCCc- -3'
miRNA:   3'- -GGCU-------------UCGGCCCu--GGCCGuGGCAGGcc -5'
20477 3' -61.4 NC_004688.1 + 95541 0.68 0.517817
Target:  5'- uCCGAAGCUugggcuggguuccuaGGcGGCCaGGgGCCG-CCGGa -3'
miRNA:   3'- -GGCUUCGG---------------CC-CUGG-CCgUGGCaGGCC- -5'
20477 3' -61.4 NC_004688.1 + 25746 0.68 0.514064
Target:  5'- uUCGccccGCCGGGGCCgccuugGGgGCCG-CCGGa -3'
miRNA:   3'- -GGCuu--CGGCCCUGG------CCgUGGCaGGCC- -5'
20477 3' -61.4 NC_004688.1 + 28395 0.68 0.514064
Target:  5'- -gGAAGCCGGG-CUGGuCGCCGaagUUGGu -3'
miRNA:   3'- ggCUUCGGCCCuGGCC-GUGGCa--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.