miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20479 3' -61.5 NC_004688.1 + 93914 0.66 0.600579
Target:  5'- aGCGCCaaccagugcGCGCCagggCCA--GCCCCCGg- -3'
miRNA:   3'- -CGCGG---------CGCGGaa--GGUgaCGGGGGUac -5'
20479 3' -61.5 NC_004688.1 + 20543 0.66 0.550596
Target:  5'- aGCGgCGUGCCcUCCAggGCCUUgAUGg -3'
miRNA:   3'- -CGCgGCGCGGaAGGUgaCGGGGgUAC- -5'
20479 3' -61.5 NC_004688.1 + 52739 0.66 0.537793
Target:  5'- uCGCCGCGCCgaUCCGCgaaUGCugggggccggacucCCCgCAUGa -3'
miRNA:   3'- cGCGGCGCGGa-AGGUG---ACG--------------GGG-GUAC- -5'
20479 3' -61.5 NC_004688.1 + 20842 0.67 0.530941
Target:  5'- -gGCCGCGCCagUCCGCa-CCCUCGc- -3'
miRNA:   3'- cgCGGCGCGGa-AGGUGacGGGGGUac -5'
20479 3' -61.5 NC_004688.1 + 96332 0.67 0.530941
Target:  5'- aGgGgCGCGCCaaccUCCGCgGCCUCCGa- -3'
miRNA:   3'- -CgCgGCGCGGa---AGGUGaCGGGGGUac -5'
20479 3' -61.5 NC_004688.1 + 71117 0.67 0.511547
Target:  5'- cGCGCCGcCGCUgaugCCACaUGUCCaCgGUGu -3'
miRNA:   3'- -CGCGGC-GCGGaa--GGUG-ACGGG-GgUAC- -5'
20479 3' -61.5 NC_004688.1 + 56110 0.67 0.501006
Target:  5'- gGCGCUG-GCCgguaUUCCcacucgcuuggcaGCUGCCCCUcgGg -3'
miRNA:   3'- -CGCGGCgCGG----AAGG-------------UGACGGGGGuaC- -5'
20479 3' -61.5 NC_004688.1 + 26177 0.67 0.483029
Target:  5'- aUGCCgGUGCCgggCUGCUGCCUuuGUGg -3'
miRNA:   3'- cGCGG-CGCGGaa-GGUGACGGGggUAC- -5'
20479 3' -61.5 NC_004688.1 + 80975 0.68 0.473693
Target:  5'- aGCGCUGUGCCccaucccugCCACUGCUUCgCAg- -3'
miRNA:   3'- -CGCGGCGCGGaa-------GGUGACGGGG-GUac -5'
20479 3' -61.5 NC_004688.1 + 63955 0.68 0.437298
Target:  5'- cCGCCGCuGCCgaaCACgaucgcGCCCCCAc- -3'
miRNA:   3'- cGCGGCG-CGGaagGUGa-----CGGGGGUac -5'
20479 3' -61.5 NC_004688.1 + 51977 0.7 0.338586
Target:  5'- uCGCCGCuGcCCUUCuCGCUGCCgCCGc- -3'
miRNA:   3'- cGCGGCG-C-GGAAG-GUGACGGgGGUac -5'
20479 3' -61.5 NC_004688.1 + 22279 0.71 0.288931
Target:  5'- uCGCUGggaCGCCUUCCuCUGCuCCCCAa- -3'
miRNA:   3'- cGCGGC---GCGGAAGGuGACG-GGGGUac -5'
20479 3' -61.5 NC_004688.1 + 6699 0.73 0.233729
Target:  5'- -aGCCGCGCCg-CCGCgGCCCaCCAg- -3'
miRNA:   3'- cgCGGCGCGGaaGGUGaCGGG-GGUac -5'
20479 3' -61.5 NC_004688.1 + 45058 1.08 0.000663
Target:  5'- gGCGCCGCGCCUUCCACUGCCCCCAUGc -3'
miRNA:   3'- -CGCGGCGCGGAAGGUGACGGGGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.