Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20489 | 3' | -55.6 | NC_004688.1 | + | 55700 | 1.11 | 0.001455 |
Target: 5'- cUGGCGGCGUACUCAAACCAGUGCCGCu -3' miRNA: 3'- -ACCGCCGCAUGAGUUUGGUCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 1737 | 0.82 | 0.153147 |
Target: 5'- gGGCGGCGUACgUUuuACCguucugccugGGUGCCGCg -3' miRNA: 3'- aCCGCCGCAUG-AGuuUGG----------UCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 28166 | 0.77 | 0.280895 |
Target: 5'- cUGGCGGuCGUugUU--GgCGGUGCCGCa -3' miRNA: 3'- -ACCGCC-GCAugAGuuUgGUCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 19682 | 0.76 | 0.316362 |
Target: 5'- gGGCGGaaagAUUCAGACCcccgggccccGGUGCCGCa -3' miRNA: 3'- aCCGCCgca-UGAGUUUGG----------UCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 28341 | 0.75 | 0.388421 |
Target: 5'- cGGUGGCGUugUCGccgaacGACCAGcgguUGaCCGCc -3' miRNA: 3'- aCCGCCGCAugAGU------UUGGUC----AC-GGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 39852 | 0.75 | 0.39446 |
Target: 5'- gUGGCgcaGGCGUGCUUGuagauuuugccguguCCGGUGCCGUg -3' miRNA: 3'- -ACCG---CCGCAUGAGUuu-------------GGUCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 101167 | 0.74 | 0.405833 |
Target: 5'- gUGGCGGCGaUGCUCGuuGAUgAGcUGuCCGCa -3' miRNA: 3'- -ACCGCCGC-AUGAGU--UUGgUC-AC-GGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 98552 | 0.73 | 0.470445 |
Target: 5'- uUGGCGGUGU-CUCAa--CAGgcgcGCCGCa -3' miRNA: 3'- -ACCGCCGCAuGAGUuugGUCa---CGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10041 | 0.73 | 0.480102 |
Target: 5'- gGGUGGCGacUGCUUcAACCGccGCCGCg -3' miRNA: 3'- aCCGCCGC--AUGAGuUUGGUcaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 66299 | 0.72 | 0.519644 |
Target: 5'- cGGCGGCGaaACUgGAACC---GCCGCg -3' miRNA: 3'- aCCGCCGCa-UGAgUUUGGucaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 3284 | 0.71 | 0.570741 |
Target: 5'- gGGCGGUGUAgUCAAcGCCGa-GUCGCg -3' miRNA: 3'- aCCGCCGCAUgAGUU-UGGUcaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 90219 | 0.71 | 0.591544 |
Target: 5'- cGGCgGGCGgucgUCGGuCCAGuUGCCGCg -3' miRNA: 3'- aCCG-CCGCaug-AGUUuGGUC-ACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 11597 | 0.71 | 0.601996 |
Target: 5'- gGGCGaGCGc-CUCAAacugcgGCCAGaucUGCCGCu -3' miRNA: 3'- aCCGC-CGCauGAGUU------UGGUC---ACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 102856 | 0.7 | 0.643958 |
Target: 5'- uUGGCGGCgGUAC-CAggaGACCGGa-CCGCu -3' miRNA: 3'- -ACCGCCG-CAUGaGU---UUGGUCacGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10647 | 0.69 | 0.682643 |
Target: 5'- aGcGCGGCGUugUCcgcGGCCuggaucgcggucgaGGUGCCGg -3' miRNA: 3'- aC-CGCCGCAugAGu--UUGG--------------UCACGGCg -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 12278 | 0.69 | 0.685759 |
Target: 5'- aUGGUcugGGCGUugUCGuacccgauGCCGG-GCUGCu -3' miRNA: 3'- -ACCG---CCGCAugAGUu-------UGGUCaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 28750 | 0.69 | 0.685759 |
Target: 5'- gUGGuCGGCGUGC-CAu-CgAG-GCCGCg -3' miRNA: 3'- -ACC-GCCGCAUGaGUuuGgUCaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10877 | 0.69 | 0.689908 |
Target: 5'- cGGUGGCGcgcacGCcgacgaccugguuguUCGAGCCGGUGCC-Cg -3' miRNA: 3'- aCCGCCGCa----UG---------------AGUUUGGUCACGGcG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 599 | 0.69 | 0.695083 |
Target: 5'- cUGGCGGagGUccuccagGCUCAuGACCGGUggGCCGUu -3' miRNA: 3'- -ACCGCCg-CA-------UGAGU-UUGGUCA--CGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 3991 | 0.69 | 0.706417 |
Target: 5'- cGGCGGCGUGCacgCGGcccACCAcccuauUGCCGg -3' miRNA: 3'- aCCGCCGCAUGa--GUU---UGGUc-----ACGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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