Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20489 | 3' | -55.6 | NC_004688.1 | + | 599 | 0.69 | 0.695083 |
Target: 5'- cUGGCGGagGUccuccagGCUCAuGACCGGUggGCCGUu -3' miRNA: 3'- -ACCGCCg-CA-------UGAGU-UUGGUCA--CGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 1737 | 0.82 | 0.153147 |
Target: 5'- gGGCGGCGUACgUUuuACCguucugccugGGUGCCGCg -3' miRNA: 3'- aCCGCCGCAUG-AGuuUGG----------UCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 3284 | 0.71 | 0.570741 |
Target: 5'- gGGCGGUGUAgUCAAcGCCGa-GUCGCg -3' miRNA: 3'- aCCGCCGCAUgAGUU-UGGUcaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 3991 | 0.69 | 0.706417 |
Target: 5'- cGGCGGCGUGCacgCGGcccACCAcccuauUGCCGg -3' miRNA: 3'- aCCGCCGCAUGa--GUU---UGGUc-----ACGGCg -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 6033 | 0.66 | 0.871083 |
Target: 5'- cGGuCGGCGg--UCAAAcCCAG-GCCGg -3' miRNA: 3'- aCC-GCCGCaugAGUUU-GGUCaCGGCg -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 7720 | 0.66 | 0.863434 |
Target: 5'- -uGCGGUagaccgGCUCGAuCCAGUcGCCGUc -3' miRNA: 3'- acCGCCGca----UGAGUUuGGUCA-CGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10041 | 0.73 | 0.480102 |
Target: 5'- gGGUGGCGacUGCUUcAACCGccGCCGCg -3' miRNA: 3'- aCCGCCGC--AUGAGuUUGGUcaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10098 | 0.67 | 0.81318 |
Target: 5'- aGcGCGGCGcGCUCuucAGCCuuGGcGCCGUg -3' miRNA: 3'- aC-CGCCGCaUGAGu--UUGG--UCaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10378 | 0.66 | 0.863434 |
Target: 5'- gUGGCGGCGcaggcGCUCcuuGGCCGGcucgucggccaUGCCa- -3' miRNA: 3'- -ACCGCCGCa----UGAGu--UUGGUC-----------ACGGcg -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10647 | 0.69 | 0.682643 |
Target: 5'- aGcGCGGCGUugUCcgcGGCCuggaucgcggucgaGGUGCCGg -3' miRNA: 3'- aC-CGCCGCAugAGu--UUGG--------------UCACGGCg -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 10877 | 0.69 | 0.689908 |
Target: 5'- cGGUGGCGcgcacGCcgacgaccugguuguUCGAGCCGGUGCC-Cg -3' miRNA: 3'- aCCGCCGCa----UG---------------AGUUUGGUCACGGcG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 11597 | 0.71 | 0.601996 |
Target: 5'- gGGCGaGCGc-CUCAAacugcgGCCAGaucUGCCGCu -3' miRNA: 3'- aCCGC-CGCauGAGUU------UGGUC---ACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 12089 | 0.66 | 0.871083 |
Target: 5'- gUGGCuucGCGggUUUGAGCCucGGUGUCGCg -3' miRNA: 3'- -ACCGc--CGCauGAGUUUGG--UCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 12278 | 0.69 | 0.685759 |
Target: 5'- aUGGUcugGGCGUugUCGuacccgauGCCGG-GCUGCu -3' miRNA: 3'- -ACCG---CCGCAugAGUu-------UGGUCaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 12849 | 0.66 | 0.871083 |
Target: 5'- gGGUGGCcUugUCGGugCcGUGCCu- -3' miRNA: 3'- aCCGCCGcAugAGUUugGuCACGGcg -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 14826 | 0.66 | 0.839197 |
Target: 5'- cGGCGGCauuaaacCUCGcGACUGGgccUGCCGCa -3' miRNA: 3'- aCCGCCGcau----GAGU-UUGGUC---ACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 17576 | 0.67 | 0.830712 |
Target: 5'- aGGaGGCGcGCUC-AGCCAGgagcGCgGCg -3' miRNA: 3'- aCCgCCGCaUGAGuUUGGUCa---CGgCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 19682 | 0.76 | 0.316362 |
Target: 5'- gGGCGGaaagAUUCAGACCcccgggccccGGUGCCGCa -3' miRNA: 3'- aCCGCCgca-UGAGUUUGG----------UCACGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 23204 | 0.67 | 0.822037 |
Target: 5'- aGGgGGCcguugacaagGUACUgGAucuCCAGcGCCGCc -3' miRNA: 3'- aCCgCCG----------CAUGAgUUu--GGUCaCGGCG- -5' |
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20489 | 3' | -55.6 | NC_004688.1 | + | 28166 | 0.77 | 0.280895 |
Target: 5'- cUGGCGGuCGUugUU--GgCGGUGCCGCa -3' miRNA: 3'- -ACCGCC-GCAugAGuuUgGUCACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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