miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20496 3' -63.9 NC_004688.1 + 59301 1.1 0.000424
Target:  5'- gCGAUGGCCGCCGCCGGCUACGGCCGGa -3'
miRNA:   3'- -GCUACCGGCGGCGGCCGAUGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 33393 0.72 0.217895
Target:  5'- uGAUGGUCGCCGCCGGaaccuguauccACGGCg-- -3'
miRNA:   3'- gCUACCGGCGGCGGCCga---------UGCCGgcc -5'
20496 3' -63.9 NC_004688.1 + 26306 0.72 0.224115
Target:  5'- cCGA-GGCCGCCGCCcuggGGCUGCcaGCCu- -3'
miRNA:   3'- -GCUaCCGGCGGCGG----CCGAUGc-CGGcc -5'
20496 3' -63.9 NC_004688.1 + 49742 0.71 0.263448
Target:  5'- uCGAUGGCgcaagaaggaCcCCGuCUGGCgGCGGCCGGa -3'
miRNA:   3'- -GCUACCG----------GcGGC-GGCCGaUGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 23184 0.7 0.281952
Target:  5'- --cUGGaucuccagCGCCGCCuGCUggGCGGCCGGa -3'
miRNA:   3'- gcuACCg-------GCGGCGGcCGA--UGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 54328 0.7 0.29354
Target:  5'- uCGAaGGCCcagcgguacucGCCGuuGGUgaugugcccgcgGCGGCCGGg -3'
miRNA:   3'- -GCUaCCGG-----------CGGCggCCGa-----------UGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 23912 0.7 0.294851
Target:  5'- aCGuu-GCCGaguCCGCCGGCga-GGCCGGc -3'
miRNA:   3'- -GCuacCGGC---GGCGGCCGaugCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 7846 0.7 0.294851
Target:  5'- ---cGGCCGCCaGCCccaGGCcgAUGGCCGa -3'
miRNA:   3'- gcuaCCGGCGG-CGG---CCGa-UGCCGGCc -5'
20496 3' -63.9 NC_004688.1 + 58835 0.7 0.310931
Target:  5'- aGGUGGCCggacacaucugccucGUCGCCGGCgccGgGGCCa- -3'
miRNA:   3'- gCUACCGG---------------CGGCGGCCGa--UgCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 26403 0.69 0.329093
Target:  5'- --uUGuGCCGCCGCCGaggccgccggaGCUGcCGGaCCGGc -3'
miRNA:   3'- gcuAC-CGGCGGCGGC-----------CGAU-GCC-GGCC- -5'
20496 3' -63.9 NC_004688.1 + 103233 0.69 0.333394
Target:  5'- gCGaAUGGCCGCUGUCGGUcgaggucaagauUGGCCGa -3'
miRNA:   3'- -GC-UACCGGCGGCGGCCGau----------GCCGGCc -5'
20496 3' -63.9 NC_004688.1 + 55817 0.69 0.336284
Target:  5'- aGGUGGgCGCCGCgaccggCGGCUaGCGGCgcucgacaccCGGg -3'
miRNA:   3'- gCUACCgGCGGCG------GCCGA-UGCCG----------GCC- -5'
20496 3' -63.9 NC_004688.1 + 77129 0.69 0.336284
Target:  5'- cCGGUGGagGCC-CCGGCggcACGGCCa- -3'
miRNA:   3'- -GCUACCggCGGcGGCCGa--UGCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 55391 0.69 0.34359
Target:  5'- aGcgGaGCauCGCCGCCgGGCU-CGGCUGGc -3'
miRNA:   3'- gCuaC-CG--GCGGCGG-CCGAuGCCGGCC- -5'
20496 3' -63.9 NC_004688.1 + 17756 0.69 0.354008
Target:  5'- uCGggGGCCGcCCGCggcggcgcuuaggagCGGCUucgACGGCCu- -3'
miRNA:   3'- -GCuaCCGGC-GGCG---------------GCCGA---UGCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 20309 0.68 0.373941
Target:  5'- cCGA-GGCCGaCCGCgGGgU-CGGCCaGGu -3'
miRNA:   3'- -GCUaCCGGC-GGCGgCCgAuGCCGG-CC- -5'
20496 3' -63.9 NC_004688.1 + 46747 0.68 0.381807
Target:  5'- gGcgGGCCcugaUCGCCGGCgcgAUGGCCa- -3'
miRNA:   3'- gCuaCCGGc---GGCGGCCGa--UGCCGGcc -5'
20496 3' -63.9 NC_004688.1 + 29710 0.68 0.389783
Target:  5'- aGcgGGUCGuuGcCCGGCUGgggaucaccCGGCCGc -3'
miRNA:   3'- gCuaCCGGCggC-GGCCGAU---------GCCGGCc -5'
20496 3' -63.9 NC_004688.1 + 573 0.68 0.389783
Target:  5'- cCGGUgGGCCGUucuugCGCCGGC-ACGGauGGc -3'
miRNA:   3'- -GCUA-CCGGCG-----GCGGCCGaUGCCggCC- -5'
20496 3' -63.9 NC_004688.1 + 79525 0.68 0.397867
Target:  5'- ---cGGCCGCCGCCuuuugcgcggGGC-GCGGCUu- -3'
miRNA:   3'- gcuaCCGGCGGCGG----------CCGaUGCCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.