Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20496 | 3' | -63.9 | NC_004688.1 | + | 89888 | 0.66 | 0.521264 |
Target: 5'- gCGgcGGCuCGCCGCCuGGCcGgGGuCCGc -3' miRNA: 3'- -GCuaCCG-GCGGCGG-CCGaUgCC-GGCc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 77129 | 0.69 | 0.336284 |
Target: 5'- cCGGUGGagGCC-CCGGCggcACGGCCa- -3' miRNA: 3'- -GCUACCggCGGcGGCCGa--UGCCGGcc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 55391 | 0.69 | 0.34359 |
Target: 5'- aGcgGaGCauCGCCGCCgGGCU-CGGCUGGc -3' miRNA: 3'- gCuaC-CG--GCGGCGG-CCGAuGCCGGCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 17756 | 0.69 | 0.354008 |
Target: 5'- uCGggGGCCGcCCGCggcggcgcuuaggagCGGCUucgACGGCCu- -3' miRNA: 3'- -GCuaCCGGC-GGCG---------------GCCGA---UGCCGGcc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 20309 | 0.68 | 0.373941 |
Target: 5'- cCGA-GGCCGaCCGCgGGgU-CGGCCaGGu -3' miRNA: 3'- -GCUaCCGGC-GGCGgCCgAuGCCGG-CC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 46747 | 0.68 | 0.381807 |
Target: 5'- gGcgGGCCcugaUCGCCGGCgcgAUGGCCa- -3' miRNA: 3'- gCuaCCGGc---GGCGGCCGa--UGCCGGcc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 29710 | 0.68 | 0.389783 |
Target: 5'- aGcgGGUCGuuGcCCGGCUGgggaucaccCGGCCGc -3' miRNA: 3'- gCuaCCGGCggC-GGCCGAU---------GCCGGCc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 573 | 0.68 | 0.389783 |
Target: 5'- cCGGUgGGCCGUucuugCGCCGGC-ACGGauGGc -3' miRNA: 3'- -GCUA-CCGGCG-----GCGGCCGaUGCCggCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 44240 | 0.68 | 0.397867 |
Target: 5'- uCGG-GGCCggcgauGCCGCCGGUgacgUGGCCGu -3' miRNA: 3'- -GCUaCCGG------CGGCGGCCGau--GCCGGCc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 55817 | 0.69 | 0.336284 |
Target: 5'- aGGUGGgCGCCGCgaccggCGGCUaGCGGCgcucgacaccCGGg -3' miRNA: 3'- gCUACCgGCGGCG------GCCGA-UGCCG----------GCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 103233 | 0.69 | 0.333394 |
Target: 5'- gCGaAUGGCCGCUGUCGGUcgaggucaagauUGGCCGa -3' miRNA: 3'- -GC-UACCGGCGGCGGCCGau----------GCCGGCc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 26403 | 0.69 | 0.329093 |
Target: 5'- --uUGuGCCGCCGCCGaggccgccggaGCUGcCGGaCCGGc -3' miRNA: 3'- gcuAC-CGGCGGCGGC-----------CGAU-GCC-GGCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 33393 | 0.72 | 0.217895 |
Target: 5'- uGAUGGUCGCCGCCGGaaccuguauccACGGCg-- -3' miRNA: 3'- gCUACCGGCGGCGGCCga---------UGCCGgcc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 26306 | 0.72 | 0.224115 |
Target: 5'- cCGA-GGCCGCCGCCcuggGGCUGCcaGCCu- -3' miRNA: 3'- -GCUaCCGGCGGCGG----CCGAUGc-CGGcc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 49742 | 0.71 | 0.263448 |
Target: 5'- uCGAUGGCgcaagaaggaCcCCGuCUGGCgGCGGCCGGa -3' miRNA: 3'- -GCUACCG----------GcGGC-GGCCGaUGCCGGCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 23184 | 0.7 | 0.281952 |
Target: 5'- --cUGGaucuccagCGCCGCCuGCUggGCGGCCGGa -3' miRNA: 3'- gcuACCg-------GCGGCGGcCGA--UGCCGGCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 54328 | 0.7 | 0.29354 |
Target: 5'- uCGAaGGCCcagcgguacucGCCGuuGGUgaugugcccgcgGCGGCCGGg -3' miRNA: 3'- -GCUaCCGG-----------CGGCggCCGa-----------UGCCGGCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 23912 | 0.7 | 0.294851 |
Target: 5'- aCGuu-GCCGaguCCGCCGGCga-GGCCGGc -3' miRNA: 3'- -GCuacCGGC---GGCGGCCGaugCCGGCC- -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 7846 | 0.7 | 0.294851 |
Target: 5'- ---cGGCCGCCaGCCccaGGCcgAUGGCCGa -3' miRNA: 3'- gcuaCCGGCGG-CGG---CCGa-UGCCGGCc -5' |
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20496 | 3' | -63.9 | NC_004688.1 | + | 58835 | 0.7 | 0.310931 |
Target: 5'- aGGUGGCCggacacaucugccucGUCGCCGGCgccGgGGCCa- -3' miRNA: 3'- gCUACCGG---------------CGGCGGCCGa--UgCCGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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