miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20509 5' -53.8 NC_004688.1 + 53633 0.66 0.925987
Target:  5'- --cCGGCAuugACgucGCCGGCCuGCUUGUCGg -3'
miRNA:   3'- acaGCUGU---UGa--CGGCUGG-UGAGCAGU- -5'
20509 5' -53.8 NC_004688.1 + 53441 0.66 0.92032
Target:  5'- aUGUCGGCGAC-GCCGuGCCGCccCGg-- -3'
miRNA:   3'- -ACAGCUGUUGaCGGC-UGGUGa-GCagu -5'
20509 5' -53.8 NC_004688.1 + 55950 0.66 0.92032
Target:  5'- -cUCGAUAGC-GCCGcgaaGCCGCUCGaugUCAu -3'
miRNA:   3'- acAGCUGUUGaCGGC----UGGUGAGC---AGU- -5'
20509 5' -53.8 NC_004688.1 + 12613 0.67 0.901798
Target:  5'- cG-CGAC-ACUGCuCGAUCACcacgUCGUCGg -3'
miRNA:   3'- aCaGCUGuUGACG-GCUGGUG----AGCAGU- -5'
20509 5' -53.8 NC_004688.1 + 30792 0.67 0.881042
Target:  5'- --aCGGCAGCUcGCCGaaGCCGCccucgggCGUCAg -3'
miRNA:   3'- acaGCUGUUGA-CGGC--UGGUGa------GCAGU- -5'
20509 5' -53.8 NC_004688.1 + 89498 0.68 0.858164
Target:  5'- cGUCGACAuuCUGUCGACCcaggcgcaugaAUUCGgUCGu -3'
miRNA:   3'- aCAGCUGUu-GACGGCUGG-----------UGAGC-AGU- -5'
20509 5' -53.8 NC_004688.1 + 15382 0.68 0.841812
Target:  5'- -aUCGGCuacaagcaAGCUgGCCGGCUACUCGcCAa -3'
miRNA:   3'- acAGCUG--------UUGA-CGGCUGGUGAGCaGU- -5'
20509 5' -53.8 NC_004688.1 + 37892 0.7 0.74925
Target:  5'- gGUCGugGGCgagGUCGGCCuuaUCGUCc -3'
miRNA:   3'- aCAGCugUUGa--CGGCUGGug-AGCAGu -5'
20509 5' -53.8 NC_004688.1 + 17722 0.71 0.729103
Target:  5'- -uUCGACGGcCUGCuCGAgCgGCUCGUCGg -3'
miRNA:   3'- acAGCUGUU-GACG-GCU-GgUGAGCAGU- -5'
20509 5' -53.8 NC_004688.1 + 44578 0.71 0.729103
Target:  5'- aGUCGACGGCgggGCCGAUCGUguaCGUCc -3'
miRNA:   3'- aCAGCUGUUGa--CGGCUGGUGa--GCAGu -5'
20509 5' -53.8 NC_004688.1 + 17947 0.71 0.677345
Target:  5'- aGUCGugGccGCUGCCGugCAgUCGa-- -3'
miRNA:   3'- aCAGCugU--UGACGGCugGUgAGCagu -5'
20509 5' -53.8 NC_004688.1 + 42349 0.73 0.614023
Target:  5'- cGUCGAcCGACuUGCCGGCCACgagggcgCGgUCGg -3'
miRNA:   3'- aCAGCU-GUUG-ACGGCUGGUGa------GC-AGU- -5'
20509 5' -53.8 NC_004688.1 + 104207 0.73 0.614023
Target:  5'- cGUCGACAAggccaUGcCCGACCAUUgGUCu -3'
miRNA:   3'- aCAGCUGUUg----AC-GGCUGGUGAgCAGu -5'
20509 5' -53.8 NC_004688.1 + 40940 0.74 0.524541
Target:  5'- gGUCGGgGACUggagcgggugacucgGCCGuCCACUCGUCc -3'
miRNA:   3'- aCAGCUgUUGA---------------CGGCuGGUGAGCAGu -5'
20509 5' -53.8 NC_004688.1 + 70945 1.09 0.003597
Target:  5'- cUGUCGACAACUGCCGACCACUCGUCAu -3'
miRNA:   3'- -ACAGCUGUUGACGGCUGGUGAGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.