miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20535 5' -64.4 NC_004688.1 + 86596 0.66 0.505778
Target:  5'- uUGCGcACCGCGGguaccggagccacGGCCaGCUCCAuuguuauGGGg -3'
miRNA:   3'- gGCGC-UGGCGUC-------------CCGGgCGAGGU-------CCC- -5'
20535 5' -64.4 NC_004688.1 + 48482 0.66 0.498417
Target:  5'- aCCGUGACCaaAcGGCCagGC-CCGGGGa -3'
miRNA:   3'- -GGCGCUGGcgUcCCGGg-CGaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 25529 0.66 0.4975
Target:  5'- uCUGCccagGACCGCcGGGUgacccaCCGCcacccauUCCGGGGa -3'
miRNA:   3'- -GGCG----CUGGCGuCCCG------GGCG-------AGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 6698 0.66 0.489283
Target:  5'- gCCGCG-CCGCcGcGGCCCaccaggaucuCUUCGGGGc -3'
miRNA:   3'- -GGCGCuGGCGuC-CCGGGc---------GAGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 100291 0.66 0.489283
Target:  5'- gCCGCGACUGCggacacaaguGGGGCCagaaGCUCa---- -3'
miRNA:   3'- -GGCGCUGGCG----------UCCCGGg---CGAGguccc -5'
20535 5' -64.4 NC_004688.1 + 16948 0.66 0.488374
Target:  5'- uUCGgGGCCGCuggcGGGCUUcaacacgGCgCCGGGGa -3'
miRNA:   3'- -GGCgCUGGCGu---CCCGGG-------CGaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 20573 0.66 0.486559
Target:  5'- -aGCGGCuugucguagCGCAGGGCgUCGaccagcggcgugccCUCCAGGGc -3'
miRNA:   3'- ggCGCUG---------GCGUCCCG-GGC--------------GAGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 82822 0.66 0.480229
Target:  5'- cCCuCGAUgGCGuGGGCCCGCaucaUCCAGc- -3'
miRNA:   3'- -GGcGCUGgCGU-CCCGGGCG----AGGUCcc -5'
20535 5' -64.4 NC_004688.1 + 20895 0.66 0.471257
Target:  5'- gCCgGCGACCGCAacggccguGGGCgCCGUggcgaaCAGcGGg -3'
miRNA:   3'- -GG-CGCUGGCGU--------CCCG-GGCGag----GUC-CC- -5'
20535 5' -64.4 NC_004688.1 + 91135 0.66 0.471257
Target:  5'- aUGUGAUCauGCGGGGUgCGCgCCAGGu -3'
miRNA:   3'- gGCGCUGG--CGUCCCGgGCGaGGUCCc -5'
20535 5' -64.4 NC_004688.1 + 27550 0.66 0.462371
Target:  5'- aCGgGGuCCaGC-GGGCCCGg-CCGGGGa -3'
miRNA:   3'- gGCgCU-GG-CGuCCCGGGCgaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 20310 0.67 0.453574
Target:  5'- gCCGaggcCGACCGCGGGGUCgGC--CAGGu -3'
miRNA:   3'- -GGC----GCUGGCGUCCCGGgCGagGUCCc -5'
20535 5' -64.4 NC_004688.1 + 667 0.67 0.453574
Target:  5'- gCCGCccggagGGCgCGCAGGGCCCuuugaugcCUCCAGc- -3'
miRNA:   3'- -GGCG------CUG-GCGUCCCGGGc-------GAGGUCcc -5'
20535 5' -64.4 NC_004688.1 + 41797 0.67 0.453574
Target:  5'- -gGUGACCGCguuGGGGUCC--UCCGGGa -3'
miRNA:   3'- ggCGCUGGCG---UCCCGGGcgAGGUCCc -5'
20535 5' -64.4 NC_004688.1 + 55809 0.67 0.444868
Target:  5'- gCCGCGACCggcggcuaGCGGcGCUCGacacCCGGGGu -3'
miRNA:   3'- -GGCGCUGG--------CGUCcCGGGCga--GGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 90949 0.67 0.444868
Target:  5'- aCUGCGGCguaCAGGGCCgGgagauccaaUCCGGGGa -3'
miRNA:   3'- -GGCGCUGgc-GUCCCGGgCg--------AGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 69698 0.67 0.427743
Target:  5'- aCCaGgG-UgGCAGcGGCCUGCUCCGGGc -3'
miRNA:   3'- -GG-CgCuGgCGUC-CCGGGCGAGGUCCc -5'
20535 5' -64.4 NC_004688.1 + 17863 0.67 0.411014
Target:  5'- gUGCGGCgGCgAGGGCgCGUgcggUCuCAGGGu -3'
miRNA:   3'- gGCGCUGgCG-UCCCGgGCG----AG-GUCCC- -5'
20535 5' -64.4 NC_004688.1 + 25041 0.67 0.411014
Target:  5'- aUCGCGACUGgGGaaGGCCUcCaCCAGGGg -3'
miRNA:   3'- -GGCGCUGGCgUC--CCGGGcGaGGUCCC- -5'
20535 5' -64.4 NC_004688.1 + 10774 0.68 0.402803
Target:  5'- cUCGuCGACCGagaCAGcGGCCUGaUCCAGGa -3'
miRNA:   3'- -GGC-GCUGGC---GUC-CCGGGCgAGGUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.