Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 3487 | 0.66 | 0.653923 |
Target: 5'- uGGUCgGCGGcuugcugauggUGCCAGCCgaGGcCUCUu -3' miRNA: 3'- cCCAGgCGCUa----------ACGGUCGGg-CC-GAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 4622 | 0.66 | 0.660954 |
Target: 5'- cGGGUCgagaaugaggccgcaCGCGGcgGCCAggucaaucgcuuccuGCCCGGCagaggauuuagcuUCCg -3' miRNA: 3'- -CCCAG---------------GCGCUaaCGGU---------------CGGGCCG-------------AGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 5162 | 0.68 | 0.557761 |
Target: 5'- cGGG-CaCGCGGUaGCgguagauguucgaauCGGCCCGGC-CCg -3' miRNA: 3'- -CCCaG-GCGCUAaCG---------------GUCGGGCCGaGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 9427 | 0.66 | 0.653923 |
Target: 5'- cGGUCuCGCGGaa-CCAucGCUCGGCUUCu -3' miRNA: 3'- cCCAG-GCGCUaacGGU--CGGGCCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 9821 | 0.67 | 0.623729 |
Target: 5'- -cGUCCGCGg--GCCcGCCCGGaugUCg -3' miRNA: 3'- ccCAGGCGCuaaCGGuCGGGCCga-GG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 17122 | 0.71 | 0.381075 |
Target: 5'- cGGcGUCCacGCGcagcaGCCAaucGCCCGGCUCUg -3' miRNA: 3'- -CC-CAGG--CGCuaa--CGGU---CGGGCCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 18090 | 0.66 | 0.680973 |
Target: 5'- uGGGcCCGCGGcaccaccagccGCacuucuuauagagCAGCCgGGCUCCc -3' miRNA: 3'- -CCCaGGCGCUaa---------CG-------------GUCGGgCCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 24223 | 0.67 | 0.62071 |
Target: 5'- cGGcGUCCGuCGcgcccguggggaccGUUGCCGguGCCCGGggCCc -3' miRNA: 3'- -CC-CAGGC-GC--------------UAACGGU--CGGGCCgaGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 24586 | 0.66 | 0.663964 |
Target: 5'- cGGGcgUCGCGAagGUCgAGCgCGGCgcgCCg -3' miRNA: 3'- -CCCa-GGCGCUaaCGG-UCGgGCCGa--GG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 27548 | 0.68 | 0.543986 |
Target: 5'- gGGGUCCaGCGGgc-CCGGCCgGGgaUCa -3' miRNA: 3'- -CCCAGG-CGCUaacGGUCGGgCCgaGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 28402 | 0.67 | 0.603619 |
Target: 5'- aGGUCCGgGAa-GCCGGgCUGGUcgCCg -3' miRNA: 3'- cCCAGGCgCUaaCGGUCgGGCCGa-GG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 48902 | 0.74 | 0.25408 |
Target: 5'- uGGGUUCGCGGUcccugUGCC-GCggGGCUCCg -3' miRNA: 3'- -CCCAGGCGCUA-----ACGGuCGggCCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 51370 | 0.67 | 0.623729 |
Target: 5'- cGGGU-CGCGGUcgcaccggGCCGGUccuaCCGGCUgCu -3' miRNA: 3'- -CCCAgGCGCUAa-------CGGUCG----GGCCGAgG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 52728 | 0.68 | 0.553815 |
Target: 5'- --aUCCGCGAaUGCUggGGgCCGGaCUCCc -3' miRNA: 3'- cccAGGCGCUaACGG--UCgGGCC-GAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 53657 | 0.71 | 0.357219 |
Target: 5'- uGGGcCUGCGg--GUCcGCCCaGGCUCCg -3' miRNA: 3'- -CCCaGGCGCuaaCGGuCGGG-CCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 58394 | 0.66 | 0.683964 |
Target: 5'- uGGGcaCCGCGGUgugGCUGG-CgGGCUUCg -3' miRNA: 3'- -CCCa-GGCGCUAa--CGGUCgGgCCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 64653 | 0.69 | 0.477077 |
Target: 5'- --cUCCG-GAgaGCCAgugaagggugucGCCCGGCUCCa -3' miRNA: 3'- cccAGGCgCUaaCGGU------------CGGGCCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 71252 | 0.71 | 0.356442 |
Target: 5'- uGGUCgGCGAUUuCCcgGGCCCGGCggcucuucccgcuUCCg -3' miRNA: 3'- cCCAGgCGCUAAcGG--UCGGGCCG-------------AGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 76378 | 0.67 | 0.623729 |
Target: 5'- aGGGUCCagaGCGGgaacgggagGcCCAGCCaccaGGUUCUg -3' miRNA: 3'- -CCCAGG---CGCUaa-------C-GGUCGGg---CCGAGG- -5' |
|||||||
20543 | 5' | -60.4 | NC_004688.1 | + | 86797 | 0.66 | 0.683964 |
Target: 5'- -cGUCC-CGAacgggaccGCCGGuCCCGGCUUCu -3' miRNA: 3'- ccCAGGcGCUaa------CGGUC-GGGCCGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home