miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20575 3' -54.1 NC_004688.1 + 68863 0.66 0.932004
Target:  5'- gCCUGggcggCGGGGUcGCCGGuccggacguagUGGUAgccGGCg -3'
miRNA:   3'- -GGACaa---GUCCCAaCGGCU-----------GCCGU---UCG- -5'
20575 3' -54.1 NC_004688.1 + 107377 0.66 0.932004
Target:  5'- gCUGgUCGGcGGcUUGCUGAUGGUGccAGCc -3'
miRNA:   3'- gGACaAGUC-CC-AACGGCUGCCGU--UCG- -5'
20575 3' -54.1 NC_004688.1 + 94183 0.66 0.921043
Target:  5'- aCUGcggUAGGGUUGgggcaUCG-CGGCGGGCc -3'
miRNA:   3'- gGACaa-GUCCCAAC-----GGCuGCCGUUCG- -5'
20575 3' -54.1 NC_004688.1 + 97545 0.66 0.915183
Target:  5'- gCUGUccaauucgUCAGGGUcG-CGGCGGUAgAGCc -3'
miRNA:   3'- gGACA--------AGUCCCAaCgGCUGCCGU-UCG- -5'
20575 3' -54.1 NC_004688.1 + 27050 0.66 0.909073
Target:  5'- aCCgug-CAGGcguaGUUGCUGuuGGCGGGCg -3'
miRNA:   3'- -GGacaaGUCC----CAACGGCugCCGUUCG- -5'
20575 3' -54.1 NC_004688.1 + 95853 0.66 0.909073
Target:  5'- cUCUGg-CGGGGUccccccUGuCCGAUGGCcacAAGCa -3'
miRNA:   3'- -GGACaaGUCCCA------AC-GGCUGCCG---UUCG- -5'
20575 3' -54.1 NC_004688.1 + 30365 0.66 0.909073
Target:  5'- gCCagGUgCGGGaGccGCCGAaGGCGAGCa -3'
miRNA:   3'- -GGa-CAaGUCC-CaaCGGCUgCCGUUCG- -5'
20575 3' -54.1 NC_004688.1 + 90123 0.67 0.902713
Target:  5'- cCUUGUUCcagcuGGaGUUGCCG-CGGUuacgcAGCg -3'
miRNA:   3'- -GGACAAGu----CC-CAACGGCuGCCGu----UCG- -5'
20575 3' -54.1 NC_004688.1 + 17997 0.67 0.896107
Target:  5'- aCCUGggcguugCGGGGUUGUCG-UGGUcuuGCu -3'
miRNA:   3'- -GGACaa-----GUCCCAACGGCuGCCGuu-CG- -5'
20575 3' -54.1 NC_004688.1 + 104016 0.67 0.882168
Target:  5'- --cGUUCAGGGaaugcugaucGCCGugGGaCAgcAGCg -3'
miRNA:   3'- ggaCAAGUCCCaa--------CGGCugCC-GU--UCG- -5'
20575 3' -54.1 NC_004688.1 + 8474 0.67 0.882168
Target:  5'- aCCUGaccguugagCAGGuGUgGCCGGCGgaGCAGGUg -3'
miRNA:   3'- -GGACaa-------GUCC-CAaCGGCUGC--CGUUCG- -5'
20575 3' -54.1 NC_004688.1 + 88277 0.67 0.874845
Target:  5'- uCUUGUcgaggUCGGccUUGCCGGCGGCAAccuGCu -3'
miRNA:   3'- -GGACA-----AGUCccAACGGCUGCCGUU---CG- -5'
20575 3' -54.1 NC_004688.1 + 20991 0.68 0.851522
Target:  5'- gCCUGgcCGGGGUccgcuuccgugGCCGACGGgGAu- -3'
miRNA:   3'- -GGACaaGUCCCAa----------CGGCUGCCgUUcg -5'
20575 3' -54.1 NC_004688.1 + 32918 0.68 0.834912
Target:  5'- --gGUUCGauGGGUgGCCgGGCGGCGGGa -3'
miRNA:   3'- ggaCAAGU--CCCAaCGG-CUGCCGUUCg -5'
20575 3' -54.1 NC_004688.1 + 93105 0.69 0.817523
Target:  5'- aCCU-UUCGGGGgccGCCcGCGGC-GGCg -3'
miRNA:   3'- -GGAcAAGUCCCaa-CGGcUGCCGuUCG- -5'
20575 3' -54.1 NC_004688.1 + 46827 0.69 0.799422
Target:  5'- gCCUGggCAGGGaccugacacgGCCGA--GCGAGCu -3'
miRNA:   3'- -GGACaaGUCCCaa--------CGGCUgcCGUUCG- -5'
20575 3' -54.1 NC_004688.1 + 10184 0.7 0.761378
Target:  5'- -aUGUUCGcGGGgcugucGCUGACGGC-GGCa -3'
miRNA:   3'- ggACAAGU-CCCaa----CGGCUGCCGuUCG- -5'
20575 3' -54.1 NC_004688.1 + 64585 0.72 0.648695
Target:  5'- --gGUUguGGGUUGCgaCGACGGCAcGGUu -3'
miRNA:   3'- ggaCAAguCCCAACG--GCUGCCGU-UCG- -5'
20575 3' -54.1 NC_004688.1 + 102014 0.72 0.638178
Target:  5'- aCUGgacgUCGGGGUcgcguuUGUCGA-GGCGGGCc -3'
miRNA:   3'- gGACa---AGUCCCA------ACGGCUgCCGUUCG- -5'
20575 3' -54.1 NC_004688.1 + 92736 0.74 0.52393
Target:  5'- gCCUccUCGGcGGUgaaGCCGugGGUGAGCg -3'
miRNA:   3'- -GGAcaAGUC-CCAa--CGGCugCCGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.