Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20575 | 5' | -59.6 | NC_004688.1 | + | 110488 | 0.71 | 0.377151 |
Target: 5'- uGGggCGCUgaaagaAGuCGCCAcagGCCCCGCACUg -3' miRNA: 3'- cUCuaGCGG------UC-GCGGU---UGGGGCGUGA- -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 82402 | 0.71 | 0.36896 |
Target: 5'- -cGAUCGUCggauuGGCGCCGGgCCCGuCGCUg -3' miRNA: 3'- cuCUAGCGG-----UCGCGGUUgGGGC-GUGA- -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 86662 | 0.72 | 0.315105 |
Target: 5'- gGGGAccgUUGCCGGUGCCcggGGCCCCGCcCg -3' miRNA: 3'- -CUCU---AGCGGUCGCGG---UUGGGGCGuGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 97309 | 0.73 | 0.293911 |
Target: 5'- -cGAUCGCUucGGCGCgGacuucgauGCCCCGCACc -3' miRNA: 3'- cuCUAGCGG--UCGCGgU--------UGGGGCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 87784 | 0.76 | 0.184948 |
Target: 5'- cGAGA-CGCCgAGCGCCAgcgugccaaACCCUGCGCc -3' miRNA: 3'- -CUCUaGCGG-UCGCGGU---------UGGGGCGUGa -5' |
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20575 | 5' | -59.6 | NC_004688.1 | + | 16964 | 0.77 | 0.146982 |
Target: 5'- -uGcgCGCCAGgGCCAGCCCCcgGCGCa -3' miRNA: 3'- cuCuaGCGGUCgCGGUUGGGG--CGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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