miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 59281 0.71 0.575297
Target:  5'- gUCCCGCCaaaaCCAAuaauCCCAcggccAAUGCCCCa -3'
miRNA:   3'- -GGGGCGGg---GGUU----GGGUu----UUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 105389 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 124403 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 69922 0.71 0.555263
Target:  5'- uCCaCCGCCCCCGAuCCCGcugcAAGUaagGCCaCUCg -3'
miRNA:   3'- -GG-GGCGGGGGUU-GGGU----UUUA---UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 93150 0.71 0.555263
Target:  5'- -aCUGaaCCCUCAGCCUGGAAcgGCCCCCa -3'
miRNA:   3'- ggGGC--GGGGGUUGGGUUUUa-UGGGGG- -5'
2059 3' -57 NC_001348.1 + 106034 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 123757 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 124503 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 105289 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 115877 0.72 0.515866
Target:  5'- uUCCCGUgauaauUCCgAACCCcaucAAUACCCCCa -3'
miRNA:   3'- -GGGGCG------GGGgUUGGGuu--UUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 110772 0.73 0.474834
Target:  5'- gCCUgGCCggguggaucuCCCAACCCGGAGUACaaaacgcgccggggCCCCg -3'
miRNA:   3'- -GGGgCGG----------GGGUUGGGUUUUAUG--------------GGGG- -5'
2059 3' -57 NC_001348.1 + 119020 0.73 0.474834
Target:  5'- gCCUgGCCggguggaucuCCCAACCCGGAGUACaaaacgcgccggggCCCCg -3'
miRNA:   3'- -GGGgCGG----------GGGUUGGGUUUUAUG--------------GGGG- -5'
2059 3' -57 NC_001348.1 + 13308 0.73 0.459064
Target:  5'- cCUCCGUCCCC-AUCCGAGAUccugccgggggACCCaCCa -3'
miRNA:   3'- -GGGGCGGGGGuUGGGUUUUA-----------UGGG-GG- -5'
2059 3' -57 NC_001348.1 + 105074 0.73 0.449919
Target:  5'- aCCCC-CCCCCGguuucugggcGCCCGGcggACCCCg -3'
miRNA:   3'- -GGGGcGGGGGU----------UGGGUUuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 106868 0.74 0.435498
Target:  5'- aCCCCGgUCCCGucggaCCAGGcucgcaaggcguacuGUACCCCCg -3'
miRNA:   3'- -GGGGCgGGGGUug---GGUUU---------------UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 122924 0.74 0.435498
Target:  5'- aCCCCGgUCCCGucggaCCAGGcucgcaaggcguacuGUACCCCCg -3'
miRNA:   3'- -GGGGCgGGGGUug---GGUUU---------------UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 105651 0.74 0.397267
Target:  5'- gCCCUcCCCCCGAuuCCCAGAGUaaugugGCCgCCCg -3'
miRNA:   3'- -GGGGcGGGGGUU--GGGUUUUA------UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 124141 0.74 0.397267
Target:  5'- gCCCUcCCCCCGAuuCCCAGAGUaaugugGCCgCCCg -3'
miRNA:   3'- -GGGGcGGGGGUU--GGGUUUUA------UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 111133 0.75 0.356531
Target:  5'- aCCCCGUCCCCAAagagacCCCAGcGUGCCaUCg -3'
miRNA:   3'- -GGGGCGGGGGUU------GGGUUuUAUGGgGG- -5'
2059 3' -57 NC_001348.1 + 118659 0.75 0.356531
Target:  5'- aCCCCGUCCCCAAagagacCCCAGcGUGCCaUCg -3'
miRNA:   3'- -GGGGCGGGGGUU------GGGUUuUAUGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.