miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 107197 0.69 0.710802
Target:  5'- aCCCCggccacacagGCUCCCGACCCucagccgucgGCCgCCg -3'
miRNA:   3'- -GGGG----------CGGGGGUUGGGuuuua-----UGGgGG- -5'
2059 3' -57 NC_001348.1 + 40909 0.69 0.696845
Target:  5'- -gCCGCCCCCGuuACUguAAaaacugucGUugCCCCg -3'
miRNA:   3'- ggGGCGGGGGU--UGGguUU--------UAugGGGG- -5'
2059 3' -57 NC_001348.1 + 102948 0.69 0.690831
Target:  5'- -aCUGCCCCCugguaaguccgacacGAUUCGGAAUGCCCgCa -3'
miRNA:   3'- ggGGCGGGGG---------------UUGGGUUUUAUGGGgG- -5'
2059 3' -57 NC_001348.1 + 119479 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 110056 0.69 0.686811
Target:  5'- cCCCCcCaCCCCAcCCCAuuccACCCCa -3'
miRNA:   3'- -GGGGcG-GGGGUuGGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 102443 0.69 0.686811
Target:  5'- cCCCCGCaaguuugcuuuaCCCUcGCCUucaccACCCCCg -3'
miRNA:   3'- -GGGGCG------------GGGGuUGGGuuuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 60904 0.69 0.686811
Target:  5'- aCCCGuacgguCCCCCGAaguguCCCGGAGggcaaccauaACCCCCu -3'
miRNA:   3'- gGGGC------GGGGGUU-----GGGUUUUa---------UGGGGG- -5'
2059 3' -57 NC_001348.1 + 110313 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 72497 0.69 0.677742
Target:  5'- gCCCGCCaucuccuugauauaaCCGACCCuaacacguuAAAcauaccgucuAUACCCCCa -3'
miRNA:   3'- gGGGCGGg--------------GGUUGGG---------UUU----------UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 38002 0.69 0.676732
Target:  5'- uUUCGCCa-CAAUCCAu-AUACCCCCg -3'
miRNA:   3'- gGGGCGGggGUUGGGUuuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 121974 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 107818 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 74082 0.7 0.666616
Target:  5'- gCCCCaacuaCCCCagaaGAUCCAAGAcACCCUCu -3'
miRNA:   3'- -GGGGc----GGGGg---UUGGGUUUUaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 124701 0.7 0.646311
Target:  5'- aCCCC-CCCCCGaaaauaACCCc-----CCCCCg -3'
miRNA:   3'- -GGGGcGGGGGU------UGGGuuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 84613 0.7 0.646311
Target:  5'- aUaaGCCCCCAGCCagccaaaAAAAUugCCCg -3'
miRNA:   3'- gGggCGGGGGUUGGg------UUUUAugGGGg -5'
2059 3' -57 NC_001348.1 + 107762 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 124005 0.7 0.625961
Target:  5'- -gCUGCCCCgAGCCCcag--ACCCCg -3'
miRNA:   3'- ggGGCGGGGgUUGGGuuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 122030 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 42642 0.71 0.59549
Target:  5'- -aCCGCCCgCGGCCCAAGgcGUGCCa-- -3'
miRNA:   3'- ggGGCGGGgGUUGGGUUU--UAUGGggg -5'
2059 3' -57 NC_001348.1 + 116150 0.71 0.594477
Target:  5'- uCCCCGCUaucgauaCCaCGGCCCugauuAUACaCCCCa -3'
miRNA:   3'- -GGGGCGG-------GG-GUUGGGuuu--UAUG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.