Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2059 | 3' | -57 | NC_001348.1 | + | 54319 | 0.67 | 0.810506 |
Target: 5'- -aCUGUCCCUGGuCUUAAAcgACCCCCc -3' miRNA: 3'- ggGGCGGGGGUU-GGGUUUuaUGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 92215 | 0.67 | 0.810506 |
Target: 5'- --aCaCCCUCGACCCGGAGUACCgguUCCa -3' miRNA: 3'- gggGcGGGGGUUGGGUUUUAUGG---GGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 206 | 0.67 | 0.807882 |
Target: 5'- aCCCCGCCggucaCCCucacgucguccCCCAGcauggaugacguuGcgACCCCCa -3' miRNA: 3'- -GGGGCGG-----GGGuu---------GGGUU-------------UuaUGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 108261 | 0.67 | 0.801707 |
Target: 5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3' miRNA: 3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 121531 | 0.67 | 0.801707 |
Target: 5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3' miRNA: 3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 109802 | 0.67 | 0.796355 |
Target: 5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3' miRNA: 3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 119990 | 0.67 | 0.796355 |
Target: 5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3' miRNA: 3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 119719 | 0.67 | 0.792757 |
Target: 5'- aCCCC-CCCCCuuuuucACCCcccc-ACCCCa -3' miRNA: 3'- -GGGGcGGGGGu-----UGGGuuuuaUGGGGg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 120656 | 0.68 | 0.765083 |
Target: 5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3' miRNA: 3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 20886 | 0.68 | 0.765083 |
Target: 5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3' miRNA: 3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 109136 | 0.68 | 0.765083 |
Target: 5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3' miRNA: 3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 20970 | 0.68 | 0.765083 |
Target: 5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3' miRNA: 3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 108681 | 0.68 | 0.755613 |
Target: 5'- cCUCCGUUCCCGcagGCCUucuccccuGUAUCCCCc -3' miRNA: 3'- -GGGGCGGGGGU---UGGGuuu-----UAUGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 121111 | 0.68 | 0.755613 |
Target: 5'- cCUCCGUUCCCGcagGCCUucuccccuGUAUCCCCc -3' miRNA: 3'- -GGGGCGGGGGU---UGGGuuu-----UAUGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 103744 | 0.68 | 0.746034 |
Target: 5'- gUCCUGcCCCCCggUCCGGGGUugCUg- -3' miRNA: 3'- -GGGGC-GGGGGuuGGGUUUUAugGGgg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 105787 | 0.68 | 0.736358 |
Target: 5'- --gCGCCCCgAGCCCcag--ACCCCg -3' miRNA: 3'- gggGCGGGGgUUGGGuuuuaUGGGGg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 103506 | 0.68 | 0.726591 |
Target: 5'- aUCCCGCCUCaucacGCCCGuAAAUACCUa- -3' miRNA: 3'- -GGGGCGGGGgu---UGGGU-UUUAUGGGgg -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 39220 | 0.69 | 0.716745 |
Target: 5'- aCgUGuCCCCCGAUgCCAAcAUAUCCCCc -3' miRNA: 3'- gGgGC-GGGGGUUG-GGUUuUAUGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 114312 | 0.69 | 0.716745 |
Target: 5'- uCCCCuCCCCCGGCUCAcaGAGcUGCUCUUc -3' miRNA: 3'- -GGGGcGGGGGUUGGGU--UUU-AUGGGGG- -5' |
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2059 | 3' | -57 | NC_001348.1 | + | 122595 | 0.69 | 0.710802 |
Target: 5'- aCCCCggccacacagGCUCCCGACCCucagccgucgGCCgCCg -3' miRNA: 3'- -GGGG----------CGGGGGUUGGGuuuua-----UGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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