miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 74082 0.7 0.666616
Target:  5'- gCCCCaacuaCCCCagaaGAUCCAAGAcACCCUCu -3'
miRNA:   3'- -GGGGc----GGGGg---UUGGGUUUUaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 74257 0.67 0.819144
Target:  5'- --gCGCCCCCGAUgCGGGA-GCCgCCa -3'
miRNA:   3'- gggGCGGGGGUUGgGUUUUaUGGgGG- -5'
2059 3' -57 NC_001348.1 + 84613 0.7 0.646311
Target:  5'- aUaaGCCCCCAGCCagccaaaAAAAUugCCCg -3'
miRNA:   3'- gGggCGGGGGUUGGg------UUUUAugGGGg -5'
2059 3' -57 NC_001348.1 + 92215 0.67 0.810506
Target:  5'- --aCaCCCUCGACCCGGAGUACCgguUCCa -3'
miRNA:   3'- gggGcGGGGGUUGGGUUUUAUGG---GGG- -5'
2059 3' -57 NC_001348.1 + 92492 0.66 0.867186
Target:  5'- gUUCGUaaUCCCAACCCAcauggACCUCCu -3'
miRNA:   3'- gGGGCG--GGGGUUGGGUuuua-UGGGGG- -5'
2059 3' -57 NC_001348.1 + 93062 0.77 0.276976
Target:  5'- aCCC-CCCCCugUCCAGAugguguggugcaaGUACCCCCg -3'
miRNA:   3'- gGGGcGGGGGuuGGGUUU-------------UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 93150 0.71 0.555263
Target:  5'- -aCUGaaCCCUCAGCCUGGAAcgGCCCCCa -3'
miRNA:   3'- ggGGC--GGGGGUUGGGUUUUa-UGGGGG- -5'
2059 3' -57 NC_001348.1 + 97741 0.76 0.341079
Target:  5'- aCCaaaGCCCCCGAgUCCAAAGUaacgGCCUCCa -3'
miRNA:   3'- gGGg--CGGGGGUU-GGGUUUUA----UGGGGG- -5'
2059 3' -57 NC_001348.1 + 100438 0.81 0.170572
Target:  5'- -gCCGCCCCCAGCCUAAGuauacAUGCgaCCCCg -3'
miRNA:   3'- ggGGCGGGGGUUGGGUUU-----UAUG--GGGG- -5'
2059 3' -57 NC_001348.1 + 102443 0.69 0.686811
Target:  5'- cCCCCGCaaguuugcuuuaCCCUcGCCUucaccACCCCCg -3'
miRNA:   3'- -GGGGCG------------GGGGuUGGGuuuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 102948 0.69 0.690831
Target:  5'- -aCUGCCCCCugguaaguccgacacGAUUCGGAAUGCCCgCa -3'
miRNA:   3'- ggGGCGGGGG---------------UUGGGUUUUAUGGGgG- -5'
2059 3' -57 NC_001348.1 + 103506 0.68 0.726591
Target:  5'- aUCCCGCCUCaucacGCCCGuAAAUACCUa- -3'
miRNA:   3'- -GGGGCGGGGgu---UGGGU-UUUAUGGGgg -5'
2059 3' -57 NC_001348.1 + 103744 0.68 0.746034
Target:  5'- gUCCUGcCCCCCggUCCGGGGUugCUg- -3'
miRNA:   3'- -GGGGC-GGGGGuuGGGUUUUAugGGgg -5'
2059 3' -57 NC_001348.1 + 105074 0.73 0.449919
Target:  5'- aCCCC-CCCCCGguuucugggcGCCCGGcggACCCCg -3'
miRNA:   3'- -GGGGcGGGGGU----------UGGGUUuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 105090 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 105289 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 105389 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 105651 0.74 0.397267
Target:  5'- gCCCUcCCCCCGAuuCCCAGAGUaaugugGCCgCCCg -3'
miRNA:   3'- -GGGGcGGGGGUU--GGGUUUUA------UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 105663 0.84 0.110286
Target:  5'- gCCgGCCUCCGGCCCGGcg-GCCCCCg -3'
miRNA:   3'- gGGgCGGGGGUUGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 105787 0.68 0.736358
Target:  5'- --gCGCCCCgAGCCCcag--ACCCCg -3'
miRNA:   3'- gggGCGGGGgUUGGGuuuuaUGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.