miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 109 0.66 0.867186
Target:  5'- cCCCCcCCCgCCAGCCUuuAAcaaaACCCgCg -3'
miRNA:   3'- -GGGGcGGG-GGUUGGGuuUUa---UGGGgG- -5'
2059 3' -57 NC_001348.1 + 206 0.67 0.807882
Target:  5'- aCCCCGCCggucaCCCucacgucguccCCCAGcauggaugacguuGcgACCCCCa -3'
miRNA:   3'- -GGGGCGG-----GGGuu---------GGGUU-------------UuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 338 0.66 0.866443
Target:  5'- uCCCCGCCUCUuuuuCCUcacguggAGAAUggcACCaCCCa -3'
miRNA:   3'- -GGGGCGGGGGuu--GGG-------UUUUA---UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 2531 0.66 0.851941
Target:  5'- aUCCCGCccauauauCCCCAacgucGCCUuAAAaACUCCCa -3'
miRNA:   3'- -GGGGCG--------GGGGU-----UGGGuUUUaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 9296 0.67 0.827614
Target:  5'- gCCCGUguugaCCCCAaaacagACgCAAGAUguacaacgcacaACCCCCg -3'
miRNA:   3'- gGGGCG-----GGGGU------UGgGUUUUA------------UGGGGG- -5'
2059 3' -57 NC_001348.1 + 13308 0.73 0.459064
Target:  5'- cCUCCGUCCCC-AUCCGAGAUccugccgggggACCCaCCa -3'
miRNA:   3'- -GGGGCGGGGGuUGGGUUUUA-----------UGGG-GG- -5'
2059 3' -57 NC_001348.1 + 20886 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 20970 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 38002 0.69 0.676732
Target:  5'- uUUCGCCa-CAAUCCAu-AUACCCCCg -3'
miRNA:   3'- gGGGCGGggGUUGGGUuuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 39220 0.69 0.716745
Target:  5'- aCgUGuCCCCCGAUgCCAAcAUAUCCCCc -3'
miRNA:   3'- gGgGC-GGGGGUUG-GGUUuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 40909 0.69 0.696845
Target:  5'- -gCCGCCCCCGuuACUguAAaaacugucGUugCCCCg -3'
miRNA:   3'- ggGGCGGGGGU--UGGguUU--------UAugGGGG- -5'
2059 3' -57 NC_001348.1 + 42611 1.13 0.001183
Target:  5'- aCCCCGCCCCCAACCCAAAAUACCCCCc -3'
miRNA:   3'- -GGGGCGGGGGUUGGGUUUUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 42642 0.71 0.59549
Target:  5'- -aCCGCCCgCGGCCCAAGgcGUGCCa-- -3'
miRNA:   3'- ggGGCGGGgGUUGGGUUU--UAUGGggg -5'
2059 3' -57 NC_001348.1 + 54319 0.67 0.810506
Target:  5'- -aCUGUCCCUGGuCUUAAAcgACCCCCc -3'
miRNA:   3'- ggGGCGGGGGUU-GGGUUUuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 59281 0.71 0.575297
Target:  5'- gUCCCGCCaaaaCCAAuaauCCCAcggccAAUGCCCCa -3'
miRNA:   3'- -GGGGCGGg---GGUU----GGGUu----UUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 60904 0.69 0.686811
Target:  5'- aCCCGuacgguCCCCCGAaguguCCCGGAGggcaaccauaACCCCCu -3'
miRNA:   3'- gGGGC------GGGGGUU-----GGGUUUUa---------UGGGGG- -5'
2059 3' -57 NC_001348.1 + 68584 0.66 0.839175
Target:  5'- aCCCCacuaccgccagaaacGCCCCU--CCUAAAGagGCCCCa -3'
miRNA:   3'- -GGGG---------------CGGGGGuuGGGUUUUa-UGGGGg -5'
2059 3' -57 NC_001348.1 + 69922 0.71 0.555263
Target:  5'- uCCaCCGCCCCCGAuCCCGcugcAAGUaagGCCaCUCg -3'
miRNA:   3'- -GG-GGCGGGGGUU-GGGU----UUUA---UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 70093 0.66 0.841606
Target:  5'- aUCUCGCCUCCAugUuugCGGGGUAuggaaauuaagcauCCCCCg -3'
miRNA:   3'- -GGGGCGGGGGUugG---GUUUUAU--------------GGGGG- -5'
2059 3' -57 NC_001348.1 + 72497 0.69 0.677742
Target:  5'- gCCCGCCaucuccuugauauaaCCGACCCuaacacguuAAAcauaccgucuAUACCCCCa -3'
miRNA:   3'- gGGGCGGg--------------GGUUGGG---------UUU----------UAUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.