miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 124702 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 124701 0.7 0.646311
Target:  5'- aCCCC-CCCCCGaaaauaACCCc-----CCCCCg -3'
miRNA:   3'- -GGGGcGGGGGU------UGGGuuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 124503 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 124403 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 124141 0.74 0.397267
Target:  5'- gCCCUcCCCCCGAuuCCCAGAGUaaugugGCCgCCCg -3'
miRNA:   3'- -GGGGcGGGGGUU--GGGUUUUA------UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 124129 0.84 0.110286
Target:  5'- gCCgGCCUCCGGCCCGGcg-GCCCCCg -3'
miRNA:   3'- gGGgCGGGGGUUGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 124005 0.7 0.625961
Target:  5'- -gCUGCCCCgAGCCCcag--ACCCCg -3'
miRNA:   3'- ggGGCGGGGgUUGGGuuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 123757 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 123041 0.66 0.851941
Target:  5'- ---gGCCCCCcggggaauACgCCGAAAU-CCCCCg -3'
miRNA:   3'- ggggCGGGGGu-------UG-GGUUUUAuGGGGG- -5'
2059 3' -57 NC_001348.1 + 122924 0.74 0.435498
Target:  5'- aCCCCGgUCCCGucggaCCAGGcucgcaaggcguacuGUACCCCCg -3'
miRNA:   3'- -GGGGCgGGGGUug---GGUUU---------------UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 122595 0.69 0.710802
Target:  5'- aCCCCggccacacagGCUCCCGACCCucagccgucgGCCgCCg -3'
miRNA:   3'- -GGGG----------CGGGGGUUGGGuuuua-----UGGgGG- -5'
2059 3' -57 NC_001348.1 + 122030 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 121974 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 121531 0.67 0.801707
Target:  5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3'
miRNA:   3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5'
2059 3' -57 NC_001348.1 + 121461 0.66 0.867186
Target:  5'- aCUCCGuCCCCCGAUgCAugcgcaugACCCgCu -3'
miRNA:   3'- -GGGGC-GGGGGUUGgGUuuua----UGGGgG- -5'
2059 3' -57 NC_001348.1 + 121111 0.68 0.755613
Target:  5'- cCUCCGUUCCCGcagGCCUucuccccuGUAUCCCCc -3'
miRNA:   3'- -GGGGCGGGGGU---UGGGuuu-----UAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 120946 0.66 0.859665
Target:  5'- uUCCCGUCCCa---CCAug--ACCCCg -3'
miRNA:   3'- -GGGGCGGGGguugGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 120656 0.68 0.765083
Target:  5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3'
miRNA:   3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 119990 0.67 0.796355
Target:  5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 119936 0.75 0.348743
Target:  5'- aCCgCGCCCCCucCCCAucggcgGGGUaccgcGCCCCCu -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU------UUUA-----UGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.