miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 115877 0.72 0.515866
Target:  5'- uUCCCGUgauaauUCCgAACCCcaucAAUACCCCCa -3'
miRNA:   3'- -GGGGCG------GGGgUUGGGuu--UUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 105289 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 124503 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 123757 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 106034 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 69922 0.71 0.555263
Target:  5'- uCCaCCGCCCCCGAuCCCGcugcAAGUaagGCCaCUCg -3'
miRNA:   3'- -GG-GGCGGGGGUU-GGGU----UUUA---UGG-GGG- -5'
2059 3' -57 NC_001348.1 + 93150 0.71 0.555263
Target:  5'- -aCUGaaCCCUCAGCCUGGAAcgGCCCCCa -3'
miRNA:   3'- ggGGC--GGGGGUUGGGUUUUa-UGGGGG- -5'
2059 3' -57 NC_001348.1 + 105389 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 124403 0.71 0.57429
Target:  5'- gCCCCGCCUggguuucugacggCCGuUCCGA---GCCCCCg -3'
miRNA:   3'- -GGGGCGGG-------------GGUuGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 59281 0.71 0.575297
Target:  5'- gUCCCGCCaaaaCCAAuaauCCCAcggccAAUGCCCCa -3'
miRNA:   3'- -GGGGCGGg---GGUU----GGGUu----UUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 116150 0.71 0.594477
Target:  5'- uCCCCGCUaucgauaCCaCGGCCCugauuAUACaCCCCa -3'
miRNA:   3'- -GGGGCGG-------GG-GUUGGGuuu--UAUG-GGGG- -5'
2059 3' -57 NC_001348.1 + 42642 0.71 0.59549
Target:  5'- -aCCGCCCgCGGCCCAAGgcGUGCCa-- -3'
miRNA:   3'- ggGGCGGGgGUUGGGUUU--UAUGGggg -5'
2059 3' -57 NC_001348.1 + 122030 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 124005 0.7 0.625961
Target:  5'- -gCUGCCCCgAGCCCcag--ACCCCg -3'
miRNA:   3'- ggGGCGGGGgUUGGGuuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 107762 0.7 0.625961
Target:  5'- gCCCgacggaaGCCCUUGGCCCGGAucgGCaCCCCu -3'
miRNA:   3'- -GGGg------CGGGGGUUGGGUUUua-UG-GGGG- -5'
2059 3' -57 NC_001348.1 + 124701 0.7 0.646311
Target:  5'- aCCCC-CCCCCGaaaauaACCCc-----CCCCCg -3'
miRNA:   3'- -GGGGcGGGGGU------UGGGuuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 84613 0.7 0.646311
Target:  5'- aUaaGCCCCCAGCCagccaaaAAAAUugCCCg -3'
miRNA:   3'- gGggCGGGGGUUGGg------UUUUAugGGGg -5'
2059 3' -57 NC_001348.1 + 74082 0.7 0.666616
Target:  5'- gCCCCaacuaCCCCagaaGAUCCAAGAcACCCUCu -3'
miRNA:   3'- -GGGGc----GGGGg---UUGGGUUUUaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 121974 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 38002 0.69 0.676732
Target:  5'- uUUCGCCa-CAAUCCAu-AUACCCCCg -3'
miRNA:   3'- gGGGCGGggGUUGGGUuuUAUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.