miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 121461 0.66 0.867186
Target:  5'- aCUCCGuCCCCCGAUgCAugcgcaugACCCgCu -3'
miRNA:   3'- -GGGGC-GGGGGUUGgGUuuua----UGGGgG- -5'
2059 3' -57 NC_001348.1 + 110056 0.69 0.686811
Target:  5'- cCCCCcCaCCCCAcCCCAuuccACCCCa -3'
miRNA:   3'- -GGGGcG-GGGGUuGGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 107818 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 42611 1.13 0.001183
Target:  5'- aCCCCGCCCCCAACCCAAAAUACCCCCc -3'
miRNA:   3'- -GGGGCGGGGGUUGGGUUUUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 124702 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 68584 0.66 0.839175
Target:  5'- aCCCCacuaccgccagaaacGCCCCU--CCUAAAGagGCCCCa -3'
miRNA:   3'- -GGGG---------------CGGGGGuuGGGUUUUa-UGGGGg -5'
2059 3' -57 NC_001348.1 + 108261 0.67 0.801707
Target:  5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3'
miRNA:   3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5'
2059 3' -57 NC_001348.1 + 109802 0.67 0.796355
Target:  5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 120656 0.68 0.765083
Target:  5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3'
miRNA:   3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 102948 0.69 0.690831
Target:  5'- -aCUGCCCCCugguaaguccgacacGAUUCGGAAUGCCCgCa -3'
miRNA:   3'- ggGGCGGGGG---------------UUGGGUUUUAUGGGgG- -5'
2059 3' -57 NC_001348.1 + 39220 0.69 0.716745
Target:  5'- aCgUGuCCCCCGAUgCCAAcAUAUCCCCc -3'
miRNA:   3'- gGgGC-GGGGGUUG-GGUUuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 20970 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 111246 0.66 0.859665
Target:  5'- uCCCCGUCUCgauaaCAAUCgCcGGGUACCCCg -3'
miRNA:   3'- -GGGGCGGGG-----GUUGG-GuUUUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 107197 0.69 0.710802
Target:  5'- aCCCCggccacacagGCUCCCGACCCucagccgucgGCCgCCg -3'
miRNA:   3'- -GGGG----------CGGGGGUUGGGuuuua-----UGGgGG- -5'
2059 3' -57 NC_001348.1 + 120946 0.66 0.859665
Target:  5'- uUCCCGUCCCa---CCAug--ACCCCg -3'
miRNA:   3'- -GGGGCGGGGguugGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 20886 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 40909 0.69 0.696845
Target:  5'- -gCCGCCCCCGuuACUguAAaaacugucGUugCCCCg -3'
miRNA:   3'- ggGGCGGGGGU--UGGguUU--------UAugGGGG- -5'
2059 3' -57 NC_001348.1 + 119479 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 123041 0.66 0.851941
Target:  5'- ---gGCCCCCcggggaauACgCCGAAAU-CCCCCg -3'
miRNA:   3'- ggggCGGGGGu-------UG-GGUUUUAuGGGGG- -5'
2059 3' -57 NC_001348.1 + 92215 0.67 0.810506
Target:  5'- --aCaCCCUCGACCCGGAGUACCgguUCCa -3'
miRNA:   3'- gggGcGGGGGUUGGGUUUUAUGG---GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.