miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20591 5' -61 NC_004688.1 + 100167 0.66 0.610266
Target:  5'- --gGCCUGCacgaaGCCGUC-CGUcaGGUCGACc -3'
miRNA:   3'- ucgCGGACG-----CGGCGGuGUA--CCAGCUG- -5'
20591 5' -61 NC_004688.1 + 100790 0.66 0.610266
Target:  5'- uGGCGCCgugGCGaUCGCCugAcGcUCGGCc -3'
miRNA:   3'- -UCGCGGa--CGC-GGCGGugUaCcAGCUG- -5'
20591 5' -61 NC_004688.1 + 85040 0.66 0.600098
Target:  5'- cGGCGUUggUGCGCaGCgACG-GGUCGAUg -3'
miRNA:   3'- -UCGCGG--ACGCGgCGgUGUaCCAGCUG- -5'
20591 5' -61 NC_004688.1 + 85132 0.66 0.589954
Target:  5'- gGGcCGCCUuggGgGCCGCCGgAgcgaguggGGUCGAg -3'
miRNA:   3'- -UC-GCGGA---CgCGGCGGUgUa-------CCAGCUg -5'
20591 5' -61 NC_004688.1 + 31930 0.66 0.589954
Target:  5'- -cCGCUga-GCUGCCGCGgacGGUCGGCu -3'
miRNA:   3'- ucGCGGacgCGGCGGUGUa--CCAGCUG- -5'
20591 5' -61 NC_004688.1 + 85701 0.66 0.578831
Target:  5'- cGCGCCguuuccGUGCuCGCCguacuggucgggcGCGUGGUCGcCc -3'
miRNA:   3'- uCGCGGa-----CGCG-GCGG-------------UGUACCAGCuG- -5'
20591 5' -61 NC_004688.1 + 70885 0.66 0.569764
Target:  5'- uGGCGUC--CGCCGCCGCAgUGG-CGGg -3'
miRNA:   3'- -UCGCGGacGCGGCGGUGU-ACCaGCUg -5'
20591 5' -61 NC_004688.1 + 184 0.66 0.569764
Target:  5'- uGGCGaUUGCGaCCGCCugagagccACGUGGagCGACg -3'
miRNA:   3'- -UCGCgGACGC-GGCGG--------UGUACCa-GCUG- -5'
20591 5' -61 NC_004688.1 + 58976 0.67 0.529956
Target:  5'- -uUGCCUugaaGUGCCGCgCACcUGGUCGGu -3'
miRNA:   3'- ucGCGGA----CGCGGCG-GUGuACCAGCUg -5'
20591 5' -61 NC_004688.1 + 7917 0.67 0.529956
Target:  5'- uAGcCGCCauccGCGCCGCCGa--GGaUCGGCu -3'
miRNA:   3'- -UC-GCGGa---CGCGGCGGUguaCC-AGCUG- -5'
20591 5' -61 NC_004688.1 + 95657 0.67 0.510429
Target:  5'- cGGCGCC-GCGCCGCggCACAUGaaagguGUCcagGGCa -3'
miRNA:   3'- -UCGCGGaCGCGGCG--GUGUAC------CAG---CUG- -5'
20591 5' -61 NC_004688.1 + 18829 0.67 0.510429
Target:  5'- cGCGCCggGgGCCGCCcCAUGccUGACc -3'
miRNA:   3'- uCGCGGa-CgCGGCGGuGUACcaGCUG- -5'
20591 5' -61 NC_004688.1 + 28294 0.67 0.510429
Target:  5'- cGGCGUCguagaugcGCGCCGCCAgcUGGaCGAg -3'
miRNA:   3'- -UCGCGGa-------CGCGGCGGUguACCaGCUg -5'
20591 5' -61 NC_004688.1 + 93815 0.67 0.500779
Target:  5'- uGGCGaCCU-CGCCGCCGuuUGGgccCGACc -3'
miRNA:   3'- -UCGC-GGAcGCGGCGGUguACCa--GCUG- -5'
20591 5' -61 NC_004688.1 + 88411 0.67 0.500779
Target:  5'- --aGCCUGaGCUGCUugAuucgaUGGUCGGCg -3'
miRNA:   3'- ucgCGGACgCGGCGGugU-----ACCAGCUG- -5'
20591 5' -61 NC_004688.1 + 25606 0.68 0.481726
Target:  5'- uGGCgGCCaGCGCCGCCugGUGcUCu-- -3'
miRNA:   3'- -UCG-CGGaCGCGGCGGugUACcAGcug -5'
20591 5' -61 NC_004688.1 + 33899 0.68 0.46674
Target:  5'- gGGUGCCgcaccccaucugaaGCGCuCGCCAUcgGGUCaACa -3'
miRNA:   3'- -UCGCGGa-------------CGCG-GCGGUGuaCCAGcUG- -5'
20591 5' -61 NC_004688.1 + 96946 0.68 0.444724
Target:  5'- cGCGCUccguaucguugGCGCUGCCGCAcagcgUGG-CGGCg -3'
miRNA:   3'- uCGCGGa----------CGCGGCGGUGU-----ACCaGCUG- -5'
20591 5' -61 NC_004688.1 + 87541 0.68 0.444724
Target:  5'- cGCGCCgGCGauGCC-CGUGGUCaGCc -3'
miRNA:   3'- uCGCGGaCGCggCGGuGUACCAGcUG- -5'
20591 5' -61 NC_004688.1 + 60806 0.7 0.384032
Target:  5'- cGCGCCUGCGUCGauguggCGCcgGaUCGACc -3'
miRNA:   3'- uCGCGGACGCGGCg-----GUGuaCcAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.