miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
206 5' -52.1 AC_000007.1 + 26218 1.16 0.00036
Target:  5'- aCCCAAAAAGAAGCUGCAGCUGCCGCCg -3'
miRNA:   3'- -GGGUUUUUCUUCGACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 4952 0.83 0.079297
Target:  5'- ---uAAGAG-AGCUGCAGCUGCCGUCa -3'
miRNA:   3'- ggguUUUUCuUCGACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 12507 0.8 0.136189
Target:  5'- uUCCAGAAuugcGGAgagccgguuGGcCUGCGGCUGCUGCCg -3'
miRNA:   3'- -GGGUUUU----UCU---------UC-GACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 25410 0.78 0.177072
Target:  5'- aCCUA--AAGGAGCUGCAGaaGCUGCUa -3'
miRNA:   3'- -GGGUuuUUCUUCGACGUCgaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 18779 0.77 0.210087
Target:  5'- gCCA--GAGGAGCUGCuGa-GCCGCCg -3'
miRNA:   3'- gGGUuuUUCUUCGACGuCgaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 10838 0.77 0.210087
Target:  5'- gCCAAAA--AAGCUagcGCAGCaGCCGCCg -3'
miRNA:   3'- gGGUUUUucUUCGA---CGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 21712 0.75 0.267254
Target:  5'- gCCAcaacauAAAAGAAGCaagcaacaucaacaaCAGCUGCCGCCa -3'
miRNA:   3'- gGGU------UUUUCUUCGac-------------GUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 15177 0.75 0.279796
Target:  5'- gCgGAGGAGAAGCgcgcugagGCcgaggcagcggcagaAGCUGCCGCCc -3'
miRNA:   3'- gGgUUUUUCUUCGa-------CG---------------UCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 8651 0.74 0.292023
Target:  5'- gCgCGGGcAGGAGCUGguGCUGCgCGCg -3'
miRNA:   3'- -GgGUUUuUCUUCGACguCGACG-GCGg -5'
206 5' -52.1 AC_000007.1 + 3761 0.74 0.30789
Target:  5'- gCCGuu--GGAGaCUGCAGCcuccGCCGCCg -3'
miRNA:   3'- gGGUuuuuCUUC-GACGUCGa---CGGCGG- -5'
206 5' -52.1 AC_000007.1 + 17351 0.73 0.332909
Target:  5'- cUCCGuAGAGGuuuuggacgcGGCcGCAGCgGCCGCCu -3'
miRNA:   3'- -GGGUuUUUCU----------UCGaCGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26808 0.72 0.40669
Target:  5'- aCCGcugcuGuuGCUGCcGCUGCCGCUg -3'
miRNA:   3'- gGGUuuuu-CuuCGACGuCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 1964 0.71 0.426675
Target:  5'- aCCGGGgcGc-GCUGCGGCUGCUGUUg -3'
miRNA:   3'- gGGUUUuuCuuCGACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 13671 0.71 0.457713
Target:  5'- gCCugc-GGAAGCUuuccuuucGCAGC-GCCGCCu -3'
miRNA:   3'- gGGuuuuUCUUCGA--------CGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 16385 0.71 0.479062
Target:  5'- gCCGc--GGcuGCUGCGGCgGCCGCUc -3'
miRNA:   3'- gGGUuuuUCuuCGACGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 26516 0.71 0.479062
Target:  5'- aCCAGGGccGGuAAGUcuaaGCAGCcGCCGCCg -3'
miRNA:   3'- gGGUUUU--UC-UUCGa---CGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 12390 0.7 0.489919
Target:  5'- gCCGGAcGGcuGGCucUGCAGC-GCCGCCc -3'
miRNA:   3'- gGGUUUuUCu-UCG--ACGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 2158 0.7 0.489919
Target:  5'- -gCAGGAGGAAGCcagGCGGCgGCgGCg -3'
miRNA:   3'- ggGUUUUUCUUCGa--CGUCGaCGgCGg -5'
206 5' -52.1 AC_000007.1 + 28811 0.7 0.500888
Target:  5'- gCCCuuGcGGcAGuCUGCAGC-GCUGCCa -3'
miRNA:   3'- -GGGuuUuUCuUC-GACGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 10325 0.7 0.534411
Target:  5'- aCCAAAAAGugcGGCgGCGGCUGgCGgUa -3'
miRNA:   3'- gGGUUUUUCu--UCGaCGUCGACgGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.