miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
206 5' -52.1 AC_000007.1 + 917 0.66 0.730786
Target:  5'- aCCCA---AGGcucucugcuccGGCUGCucgGGCUGCCGg- -3'
miRNA:   3'- -GGGUuuuUCU-----------UCGACG---UCGACGGCgg -5'
206 5' -52.1 AC_000007.1 + 1964 0.71 0.426675
Target:  5'- aCCGGGgcGc-GCUGCGGCUGCUGUUg -3'
miRNA:   3'- gGGUUUuuCuuCGACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 2158 0.7 0.489919
Target:  5'- -gCAGGAGGAAGCcagGCGGCgGCgGCg -3'
miRNA:   3'- ggGUUUUUCUUCGa--CGUCGaCGgCGg -5'
206 5' -52.1 AC_000007.1 + 2240 0.67 0.661898
Target:  5'- uUCCAu--GGGcuCUGCucCUGCCGCCg -3'
miRNA:   3'- -GGGUuuuUCUucGACGucGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 2466 0.66 0.741957
Target:  5'- uUCCAuAGAGcAGCUGaccacuuacuGGCUGCaGCCa -3'
miRNA:   3'- -GGGUuUUUCuUCGACg---------UCGACGgCGG- -5'
206 5' -52.1 AC_000007.1 + 3656 0.66 0.774663
Target:  5'- uUCCAucAAAcGAguuggcgcucauGGCgGCGGCUGCUGCa -3'
miRNA:   3'- -GGGU--UUUuCU------------UCGaCGUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 3761 0.74 0.30789
Target:  5'- gCCGuu--GGAGaCUGCAGCcuccGCCGCCg -3'
miRNA:   3'- gGGUuuuuCUUC-GACGUCGa---CGGCGG- -5'
206 5' -52.1 AC_000007.1 + 4952 0.83 0.079297
Target:  5'- ---uAAGAG-AGCUGCAGCUGCCGUCa -3'
miRNA:   3'- ggguUUUUCuUCGACGUCGACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 5535 0.67 0.696661
Target:  5'- cUCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCg -3'
miRNA:   3'- -GGGUUUUUcUUCGACGU-CGa----CGG--CGG- -5'
206 5' -52.1 AC_000007.1 + 6699 0.66 0.763909
Target:  5'- aCCCAuac--GAGC-GCGcGCuUGCCGCCc -3'
miRNA:   3'- -GGGUuuuucUUCGaCGU-CG-ACGGCGG- -5'
206 5' -52.1 AC_000007.1 + 7264 0.67 0.673534
Target:  5'- aCCCGuagaAAAGGGAuGCUGC-GCcuaccagGCCGUCa -3'
miRNA:   3'- -GGGU----UUUUCUU-CGACGuCGa------CGGCGG- -5'
206 5' -52.1 AC_000007.1 + 8613 0.68 0.638545
Target:  5'- aCCCGccGGGAGAGGggGCAGggGCaCGUCg -3'
miRNA:   3'- -GGGU--UUUUCUUCgaCGUCgaCG-GCGG- -5'
206 5' -52.1 AC_000007.1 + 8651 0.74 0.292023
Target:  5'- gCgCGGGcAGGAGCUGguGCUGCgCGCg -3'
miRNA:   3'- -GgGUUUuUCUUCGACguCGACG-GCGg -5'
206 5' -52.1 AC_000007.1 + 9546 0.67 0.673534
Target:  5'- uCCCGGuuauGGGuuGGCggGgGGCUGCCGUg -3'
miRNA:   3'- -GGGUUuu--UCU--UCGa-CgUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 9935 0.66 0.774663
Target:  5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCg -3'
miRNA:   3'- gGGUUUUuCUUC-GACgUCGa--CGGC-GG- -5'
206 5' -52.1 AC_000007.1 + 10325 0.7 0.534411
Target:  5'- aCCAAAAAGugcGGCgGCGGCUGgCGgUa -3'
miRNA:   3'- gGGUUUUUCu--UCGaCGUCGACgGCgG- -5'
206 5' -52.1 AC_000007.1 + 10763 0.69 0.557195
Target:  5'- uUCCuuccAGgcGCgGCGGCUGCUGCg -3'
miRNA:   3'- -GGGuuuuUCuuCGaCGUCGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 10838 0.77 0.210087
Target:  5'- gCCAAAA--AAGCUagcGCAGCaGCCGCCg -3'
miRNA:   3'- gGGUUUUucUUCGA---CGUCGaCGGCGG- -5'
206 5' -52.1 AC_000007.1 + 11109 0.67 0.673534
Target:  5'- gCCGcugcugagGAGGGggGC-GCAuCUGCCGCa -3'
miRNA:   3'- gGGU--------UUUUCuuCGaCGUcGACGGCGg -5'
206 5' -52.1 AC_000007.1 + 11172 0.66 0.738618
Target:  5'- cCCCuccugacgcgguagGAGAAGggGagggugccCUGCAuGuCUGCCGCUg -3'
miRNA:   3'- -GGG--------------UUUUUCuuC--------GACGU-C-GACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.