Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20608 | 5' | -59.2 | NC_004688.1 | + | 15398 | 0.8 | 0.125285 |
Target: 5'- gGCgGGUaaUCCCGGagGCCGCUUCC-CCu -3' miRNA: 3'- -CGgCCA--AGGGCCaaCGGCGAAGGcGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 60991 | 0.72 | 0.361687 |
Target: 5'- cCCGGUUCCgugaGGUUGUUggGCgcgCCGCCg -3' miRNA: 3'- cGGCCAAGGg---CCAACGG--CGaa-GGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 39615 | 0.72 | 0.372033 |
Target: 5'- gGUCGGcgauUUCCCGGgcccggcggcucuucCCGCUUCCGCUa -3' miRNA: 3'- -CGGCC----AAGGGCCaac------------GGCGAAGGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 34911 | 0.7 | 0.50196 |
Target: 5'- aGCC-GUUCuuGGUgGCCggcGCUUCuCGCCu -3' miRNA: 3'- -CGGcCAAGggCCAaCGG---CGAAG-GCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 76493 | 0.69 | 0.574464 |
Target: 5'- aCCGGUgaucugcaacaucacUCCCGGcugGCCGgUcUCCGCg -3' miRNA: 3'- cGGCCA---------------AGGGCCaa-CGGCgA-AGGCGg -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 92650 | 0.68 | 0.600579 |
Target: 5'- gGCCGGUgauggggCCCGuGgcGCCGgUgCCGaCCa -3' miRNA: 3'- -CGGCCAa------GGGC-CaaCGGCgAaGGC-GG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 86671 | 0.68 | 0.620778 |
Target: 5'- uGCCGGUgCCCGGg-GCC----CCGCCc -3' miRNA: 3'- -CGGCCAaGGGCCaaCGGcgaaGGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 20658 | 0.68 | 0.630893 |
Target: 5'- cGUCGG-UCCa-GUUGCCGCggaaUUCGCUg -3' miRNA: 3'- -CGGCCaAGGgcCAACGGCGa---AGGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 70870 | 0.68 | 0.630893 |
Target: 5'- -gUGGUUUCgGuGUUGUgGCgUCCGCCg -3' miRNA: 3'- cgGCCAAGGgC-CAACGgCGaAGGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 45166 | 0.68 | 0.630893 |
Target: 5'- cGCCGGggucgCCCGGc-GCCuaGCUUgCgGCCu -3' miRNA: 3'- -CGGCCaa---GGGCCaaCGG--CGAA-GgCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 36489 | 0.68 | 0.630893 |
Target: 5'- cGCCGGcuccacaCCCGGgagaUGCCGaugaugCCGUCg -3' miRNA: 3'- -CGGCCaa-----GGGCCa---ACGGCgaa---GGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 22974 | 0.67 | 0.64101 |
Target: 5'- -gCGGUUUUCGGccacGUCGCgcugCCGCCg -3' miRNA: 3'- cgGCCAAGGGCCaa--CGGCGaa--GGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 44484 | 0.67 | 0.661214 |
Target: 5'- cGCCaGGaugucUUCCUGGggaacGCCGUgcuuggCCGCCa -3' miRNA: 3'- -CGG-CC-----AAGGGCCaa---CGGCGaa----GGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 58860 | 0.67 | 0.678319 |
Target: 5'- aGCCGGUgaacauaauugaggCUGGUUcaucGCCGCUgcccuucucgcugCCGCCg -3' miRNA: 3'- -CGGCCAag------------GGCCAA----CGGCGAa------------GGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 71619 | 0.67 | 0.681327 |
Target: 5'- aCCGGUgguuguggaCCCGcuGUUGuuGCcaCCGCCa -3' miRNA: 3'- cGGCCAa--------GGGC--CAACggCGaaGGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 31331 | 0.67 | 0.681327 |
Target: 5'- aGCUGGcgCUCGGccGCCGcCUUuuGCg -3' miRNA: 3'- -CGGCCaaGGGCCaaCGGC-GAAggCGg -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 48404 | 0.67 | 0.691329 |
Target: 5'- aGCUGGcaUUCcgCCGGUUGaaGCUUuuaaguuuugcCCGCCg -3' miRNA: 3'- -CGGCC--AAG--GGCCAACggCGAA-----------GGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 29680 | 0.66 | 0.701282 |
Target: 5'- cGCCG--UCCCGGacuuuugaaUGCCGC-UCUGCg -3' miRNA: 3'- -CGGCcaAGGGCCa--------ACGGCGaAGGCGg -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 96249 | 0.66 | 0.701282 |
Target: 5'- uGCCc--UCCCGG-UGCUcagGCUuaacUCCGCCg -3' miRNA: 3'- -CGGccaAGGGCCaACGG---CGA----AGGCGG- -5' |
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20608 | 5' | -59.2 | NC_004688.1 | + | 89353 | 0.66 | 0.721009 |
Target: 5'- cGCCcuugauGGUgcggCCCGGgaguucggUGCCGuCUUCCaGCg -3' miRNA: 3'- -CGG------CCAa---GGGCCa-------ACGGC-GAAGG-CGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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