miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20608 5' -59.2 NC_004688.1 + 84690 0.66 0.750019
Target:  5'- uGCCGGUgCCgGGcUGCUGCcUuuGUg -3'
miRNA:   3'- -CGGCCAaGGgCCaACGGCGaAggCGg -5'
20608 5' -59.2 NC_004688.1 + 44484 0.67 0.661214
Target:  5'- cGCCaGGaugucUUCCUGGggaacGCCGUgcuuggCCGCCa -3'
miRNA:   3'- -CGG-CC-----AAGGGCCaa---CGGCGaa----GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 58860 0.67 0.678319
Target:  5'- aGCCGGUgaacauaauugaggCUGGUUcaucGCCGCUgcccuucucgcugCCGCCg -3'
miRNA:   3'- -CGGCCAag------------GGCCAA----CGGCGAa------------GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 31331 0.67 0.681327
Target:  5'- aGCUGGcgCUCGGccGCCGcCUUuuGCg -3'
miRNA:   3'- -CGGCCaaGGGCCaaCGGC-GAAggCGg -5'
20608 5' -59.2 NC_004688.1 + 71619 0.67 0.681327
Target:  5'- aCCGGUgguuguggaCCCGcuGUUGuuGCcaCCGCCa -3'
miRNA:   3'- cGGCCAa--------GGGC--CAACggCGaaGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 48404 0.67 0.691329
Target:  5'- aGCUGGcaUUCcgCCGGUUGaaGCUUuuaaguuuugcCCGCCg -3'
miRNA:   3'- -CGGCC--AAG--GGCCAACggCGAA-----------GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 29680 0.66 0.701282
Target:  5'- cGCCG--UCCCGGacuuuugaaUGCCGC-UCUGCg -3'
miRNA:   3'- -CGGCcaAGGGCCa--------ACGGCGaAGGCGg -5'
20608 5' -59.2 NC_004688.1 + 96249 0.66 0.701282
Target:  5'- uGCCc--UCCCGG-UGCUcagGCUuaacUCCGCCg -3'
miRNA:   3'- -CGGccaAGGGCCaACGG---CGA----AGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 89353 0.66 0.721009
Target:  5'- cGCCcuugauGGUgcggCCCGGgaguucggUGCCGuCUUCCaGCg -3'
miRNA:   3'- -CGG------CCAa---GGGCCa-------ACGGC-GAAGG-CGg -5'
20608 5' -59.2 NC_004688.1 + 22974 0.67 0.64101
Target:  5'- -gCGGUUUUCGGccacGUCGCgcugCCGCCg -3'
miRNA:   3'- cgGCCAAGGGCCaa--CGGCGaa--GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 20658 0.68 0.630893
Target:  5'- cGUCGG-UCCa-GUUGCCGCggaaUUCGCUg -3'
miRNA:   3'- -CGGCCaAGGgcCAACGGCGa---AGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 70870 0.68 0.630893
Target:  5'- -gUGGUUUCgGuGUUGUgGCgUCCGCCg -3'
miRNA:   3'- cgGCCAAGGgC-CAACGgCGaAGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 60991 0.72 0.361687
Target:  5'- cCCGGUUCCgugaGGUUGUUggGCgcgCCGCCg -3'
miRNA:   3'- cGGCCAAGGg---CCAACGG--CGaa-GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 39615 0.72 0.372033
Target:  5'- gGUCGGcgauUUCCCGGgcccggcggcucuucCCGCUUCCGCUa -3'
miRNA:   3'- -CGGCC----AAGGGCCaac------------GGCGAAGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 34911 0.7 0.50196
Target:  5'- aGCC-GUUCuuGGUgGCCggcGCUUCuCGCCu -3'
miRNA:   3'- -CGGcCAAGggCCAaCGG---CGAAG-GCGG- -5'
20608 5' -59.2 NC_004688.1 + 76493 0.69 0.574464
Target:  5'- aCCGGUgaucugcaacaucacUCCCGGcugGCCGgUcUCCGCg -3'
miRNA:   3'- cGGCCA---------------AGGGCCaa-CGGCgA-AGGCGg -5'
20608 5' -59.2 NC_004688.1 + 92650 0.68 0.600579
Target:  5'- gGCCGGUgauggggCCCGuGgcGCCGgUgCCGaCCa -3'
miRNA:   3'- -CGGCCAa------GGGC-CaaCGGCgAaGGC-GG- -5'
20608 5' -59.2 NC_004688.1 + 86671 0.68 0.620778
Target:  5'- uGCCGGUgCCCGGg-GCC----CCGCCc -3'
miRNA:   3'- -CGGCCAaGGGCCaaCGGcgaaGGCGG- -5'
20608 5' -59.2 NC_004688.1 + 36489 0.68 0.630893
Target:  5'- cGCCGGcuccacaCCCGGgagaUGCCGaugaugCCGUCg -3'
miRNA:   3'- -CGGCCaa-----GGGCCa---ACGGCgaa---GGCGG- -5'
20608 5' -59.2 NC_004688.1 + 45166 0.68 0.630893
Target:  5'- cGCCGGggucgCCCGGc-GCCuaGCUUgCgGCCu -3'
miRNA:   3'- -CGGCCaa---GGGCCaaCGG--CGAA-GgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.