miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20640 3' -47.4 NC_004688.1 + 109705 0.67 0.997131
Target:  5'- uUCUGaAACAAC-CCCgCGGGGAgagucuucucaACCCa -3'
miRNA:   3'- gAGAU-UUGUUGuGGGgGUCUUU-----------UGGG- -5'
20640 3' -47.4 NC_004688.1 + 107787 0.67 0.998005
Target:  5'- aUCac-GCGcCACCCCCGGcggcgaugagcAGAACCCc -3'
miRNA:   3'- gAGauuUGUuGUGGGGGUC-----------UUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 104872 0.67 0.998005
Target:  5'- gUCUgGAACAuCACCcucgcgCCCGGGuuGGGCCCg -3'
miRNA:   3'- gAGA-UUUGUuGUGG------GGGUCU--UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 100973 0.66 0.998892
Target:  5'- --aUAGGCGACuuugaagaaACCCCCAGu--GCCa -3'
miRNA:   3'- gagAUUUGUUG---------UGGGGGUCuuuUGGg -5'
20640 3' -47.4 NC_004688.1 + 99750 0.75 0.836247
Target:  5'- cCUCggu-CAGCACgCCCAGGuuguuGAACCCg -3'
miRNA:   3'- -GAGauuuGUUGUGgGGGUCU-----UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 97328 0.66 0.998644
Target:  5'- uUCgauGCcccGCACCUCCGGAuAGGCCUg -3'
miRNA:   3'- gAGauuUGu--UGUGGGGGUCU-UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 95425 0.72 0.955437
Target:  5'- aUCUug--AGCGCUCCguGAAAGCCCa -3'
miRNA:   3'- gAGAuuugUUGUGGGGguCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 95173 0.66 0.999273
Target:  5'- -aUUGggUAACGCcggggggugaaCCCCAGAGAaaagagaaACCCa -3'
miRNA:   3'- gaGAUuuGUUGUG-----------GGGGUCUUU--------UGGG- -5'
20640 3' -47.4 NC_004688.1 + 93937 0.66 0.998892
Target:  5'- uUCaacACGGCGCcggggaagCCCCAGuAGGGCCCa -3'
miRNA:   3'- gAGauuUGUUGUG--------GGGGUC-UUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 92802 0.69 0.98686
Target:  5'- uUCUuauaGAGCAGCcggGCUCCCGGGAGACg- -3'
miRNA:   3'- gAGA----UUUGUUG---UGGGGGUCUUUUGgg -5'
20640 3' -47.4 NC_004688.1 + 92583 0.66 0.998644
Target:  5'- uUCUuGGCGAUGCCCcagcugcgguCCAcGAGGCCCg -3'
miRNA:   3'- gAGAuUUGUUGUGGG----------GGUcUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 89172 0.66 0.999173
Target:  5'- uUCUcAAC-GCGCUCCUGGAauucgcgguucaugcGAGCCCa -3'
miRNA:   3'- gAGAuUUGuUGUGGGGGUCU---------------UUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 86875 0.67 0.997131
Target:  5'- -aCU-GACGGCcgccaGCgCCCCGGAGAuGCCCg -3'
miRNA:   3'- gaGAuUUGUUG-----UG-GGGGUCUUU-UGGG- -5'
20640 3' -47.4 NC_004688.1 + 85336 0.7 0.983075
Target:  5'- aUCUGccCAGgACCgCCGGguGACCCa -3'
miRNA:   3'- gAGAUuuGUUgUGGgGGUCuuUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 84858 0.72 0.941703
Target:  5'- -gCUGAGCGguccgccugccAUACCCCCGGgcAugCCg -3'
miRNA:   3'- gaGAUUUGU-----------UGUGGGGGUCuuUugGG- -5'
20640 3' -47.4 NC_004688.1 + 84821 0.67 0.998005
Target:  5'- ---gGGGCAcgGCUCCgGGGAGGCCCg -3'
miRNA:   3'- gagaUUUGUugUGGGGgUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 82153 0.7 0.975928
Target:  5'- gCUUUGAcCAGCGCCCCUugaGGAGGGCg- -3'
miRNA:   3'- -GAGAUUuGUUGUGGGGG---UCUUUUGgg -5'
20640 3' -47.4 NC_004688.1 + 79639 0.78 0.716565
Target:  5'- gUCUGAGCgAACACCCUCGGAu-ACCa -3'
miRNA:   3'- gAGAUUUG-UUGUGGGGGUCUuuUGGg -5'
20640 3' -47.4 NC_004688.1 + 78351 0.67 0.99835
Target:  5'- -----uGCAGaAUCUCCGGAAGGCCCu -3'
miRNA:   3'- gagauuUGUUgUGGGGGUCUUUUGGG- -5'
20640 3' -47.4 NC_004688.1 + 78104 0.75 0.867689
Target:  5'- -gUUGAACAggucggcgauaccaGCACCaauaCCCGGAAGGCCCa -3'
miRNA:   3'- gaGAUUUGU--------------UGUGG----GGGUCUUUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.