Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2066 | 5' | -58.7 | NC_001348.1 | + | 119927 | 0.68 | 0.615109 |
Target: 5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3' miRNA: 3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5' |
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2066 | 5' | -58.7 | NC_001348.1 | + | 119954 | 0.68 | 0.615109 |
Target: 5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3' miRNA: 3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5' |
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2066 | 5' | -58.7 | NC_001348.1 | + | 119981 | 0.68 | 0.615109 |
Target: 5'- cGGcGGGGUaCCGc-GCCCCCUCC-CCa -3' miRNA: 3'- cCC-CCUCA-GGUuaUGGGGGAGGuGGa -5' |
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2066 | 5' | -58.7 | NC_001348.1 | + | 122561 | 0.66 | 0.761139 |
Target: 5'- uGGGGGAGagcCCAGaggGCCUCCcccguggccauggcUUCGCCUa -3' miRNA: 3'- -CCCCCUCa--GGUUa--UGGGGG--------------AGGUGGA- -5' |
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2066 | 5' | -58.7 | NC_001348.1 | + | 124275 | 0.75 | 0.298068 |
Target: 5'- gGGGGGAGggcauUCCGA-GCCUCgUCCGCCg -3' miRNA: 3'- -CCCCCUC-----AGGUUaUGGGGgAGGUGGa -5' |
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2066 | 5' | -58.7 | NC_001348.1 | + | 124833 | 0.74 | 0.31201 |
Target: 5'- gGGGGGGGUCCGAccaGCCCgCCcgUCGCCc -3' miRNA: 3'- -CCCCCUCAGGUUa--UGGG-GGa-GGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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