miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20661 5' -57.4 NC_004688.1 + 110428 0.66 0.771096
Target:  5'- aGCGCUCucgCUcgcgcgccuuacGGCAGGcguCGCCCGu- -3'
miRNA:   3'- aCGCGAGua-GA------------CCGUCUu--GCGGGCua -5'
20661 5' -57.4 NC_004688.1 + 54381 0.66 0.761379
Target:  5'- aGCGCUgCAg--GGuCAGGGCGCgCCGGc -3'
miRNA:   3'- aCGCGA-GUagaCC-GUCUUGCG-GGCUa -5'
20661 5' -57.4 NC_004688.1 + 31710 0.66 0.761379
Target:  5'- gGCGCgc--CUGGUuguAGAGCGCgCCGAc -3'
miRNA:   3'- aCGCGaguaGACCG---UCUUGCG-GGCUa -5'
20661 5' -57.4 NC_004688.1 + 16928 0.66 0.741591
Target:  5'- gUGUGCUCAUCccGGUAGAuccucaGCGCCa--- -3'
miRNA:   3'- -ACGCGAGUAGa-CCGUCU------UGCGGgcua -5'
20661 5' -57.4 NC_004688.1 + 42372 0.66 0.731541
Target:  5'- gGCGCUCAaaaaguauuUCc-GCAGAugcuCGCCCGGa -3'
miRNA:   3'- aCGCGAGU---------AGacCGUCUu---GCGGGCUa -5'
20661 5' -57.4 NC_004688.1 + 65241 0.66 0.7214
Target:  5'- cGCGCUCAaCccagGGgGGAACGuCCUGGg -3'
miRNA:   3'- aCGCGAGUaGa---CCgUCUUGC-GGGCUa -5'
20661 5' -57.4 NC_004688.1 + 8629 0.67 0.711178
Target:  5'- aGCGCUCAUUgguggGGCcucuaauGGGCGCCaUGAa -3'
miRNA:   3'- aCGCGAGUAGa----CCGu------CUUGCGG-GCUa -5'
20661 5' -57.4 NC_004688.1 + 60568 0.67 0.672815
Target:  5'- cUGCGCUCAacgccuggcggguguUUUGGCAGugacgcaGACGCUgGAg -3'
miRNA:   3'- -ACGCGAGU---------------AGACCGUC-------UUGCGGgCUa -5'
20661 5' -57.4 NC_004688.1 + 16110 0.67 0.659198
Target:  5'- cUGCGUUCAUCUGGuCAuAGCGagaCUGAa -3'
miRNA:   3'- -ACGCGAGUAGACC-GUcUUGCg--GGCUa -5'
20661 5' -57.4 NC_004688.1 + 26950 0.69 0.575267
Target:  5'- gGCcuGUUUAuccuUCUGGguGAGCGCCUGGUg -3'
miRNA:   3'- aCG--CGAGU----AGACCguCUUGCGGGCUA- -5'
20661 5' -57.4 NC_004688.1 + 75255 0.69 0.564888
Target:  5'- gGCcUUCAUCUGGCgAGcAACGCCgGAg -3'
miRNA:   3'- aCGcGAGUAGACCG-UC-UUGCGGgCUa -5'
20661 5' -57.4 NC_004688.1 + 91153 0.69 0.564888
Target:  5'- gUGCGCgUAUCUGGUgggGGAAuCGCCCa-- -3'
miRNA:   3'- -ACGCGaGUAGACCG---UCUU-GCGGGcua -5'
20661 5' -57.4 NC_004688.1 + 34722 0.69 0.554557
Target:  5'- uUGCGaCUuuuccaugcaCGUCgGGCAGGACGCCCu-- -3'
miRNA:   3'- -ACGC-GA----------GUAGaCCGUCUUGCGGGcua -5'
20661 5' -57.4 NC_004688.1 + 24849 0.69 0.542237
Target:  5'- gGCGCUCAUagaaucgauugaUGGC-GAGCGCCuCGGg -3'
miRNA:   3'- aCGCGAGUAg-----------ACCGuCUUGCGG-GCUa -5'
20661 5' -57.4 NC_004688.1 + 12204 0.7 0.503875
Target:  5'- cGCGCcCcgagagGUCUGGaCGGAcGCGCCCGAc -3'
miRNA:   3'- aCGCGaG------UAGACC-GUCU-UGCGGGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.