miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2068 3' -65.7 NC_001348.1 + 23134 0.67 0.435959
Target:  5'- cCCCCGGCG-GuCUGGAUGuacauauCCguGGCUg -3'
miRNA:   3'- -GGGGCCGCgCuGGCCUGC-------GGguCCGG- -5'
2068 3' -65.7 NC_001348.1 + 33571 0.67 0.412024
Target:  5'- aUUCGGC-CGACgGGACuGCCguGGCa -3'
miRNA:   3'- gGGGCCGcGCUGgCCUG-CGGguCCGg -5'
2068 3' -65.7 NC_001348.1 + 66875 0.66 0.442703
Target:  5'- aCCCGaGuCGCuugugagaagcaccGaACCGGugGCCCAguaucgaauuGGCCa -3'
miRNA:   3'- gGGGC-C-GCG--------------C-UGGCCugCGGGU----------CCGG- -5'
2068 3' -65.7 NC_001348.1 + 99473 0.66 0.497738
Target:  5'- cCCCCGGCGUGGCa--ACGCU--GGCa -3'
miRNA:   3'- -GGGGCCGCGCUGgccUGCGGguCCGg -5'
2068 3' -65.7 NC_001348.1 + 104911 0.75 0.138154
Target:  5'- cUCCCGGgGuCcGCCGGGCGCCCAGaaaCCg -3'
miRNA:   3'- -GGGGCCgC-GcUGGCCUGCGGGUCc--GG- -5'
2068 3' -65.7 NC_001348.1 + 105069 0.7 0.29562
Target:  5'- cCCCCGGUuu--CUGGGCGCCC-GGCg -3'
miRNA:   3'- -GGGGCCGcgcuGGCCUGCGGGuCCGg -5'
2068 3' -65.7 NC_001348.1 + 105269 0.69 0.322142
Target:  5'- aCCCCGGUGCGuccCCGu-CGUCCccGCCc -3'
miRNA:   3'- -GGGGCCGCGCu--GGCcuGCGGGucCGG- -5'
2068 3' -65.7 NC_001348.1 + 105363 0.67 0.428445
Target:  5'- gCCCCgGGUGUGcugcgagaccGCCGGguggguuuGCGCCCGgcGGUCa -3'
miRNA:   3'- -GGGG-CCGCGC----------UGGCC--------UGCGGGU--CCGG- -5'
2068 3' -65.7 NC_001348.1 + 105830 0.7 0.264898
Target:  5'- uUCCCGaGgGacggaGACCGGGgGCcgCCGGGCCg -3'
miRNA:   3'- -GGGGC-CgCg----CUGGCCUgCG--GGUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 106089 0.74 0.152073
Target:  5'- gCCUGG-GCGuCCGGucGCGCCgGGGCCc -3'
miRNA:   3'- gGGGCCgCGCuGGCC--UGCGGgUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 106195 0.7 0.276865
Target:  5'- aCUCGGCGgucACagaaGGAcuCGCCCGGGCCg -3'
miRNA:   3'- gGGGCCGCgc-UGg---CCU--GCGGGUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 106238 1.12 0.000249
Target:  5'- gCCCCGGCGCGACCGGACGCCCAGGCCg -3'
miRNA:   3'- -GGGGCCGCGCUGGCCUGCGGGUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 106304 0.72 0.192574
Target:  5'- gUCCGGCG-GGCCGGuCcaguucccgGCCCAGGCa -3'
miRNA:   3'- gGGGCCGCgCUGGCCuG---------CGGGUCCGg -5'
2068 3' -65.7 NC_001348.1 + 106331 0.75 0.126635
Target:  5'- gCCCGGCGCcgguugcugguguugGACgCGGugGCCCucgagagguGGCCc -3'
miRNA:   3'- gGGGCCGCG---------------CUG-GCCugCGGGu--------CCGG- -5'
2068 3' -65.7 NC_001348.1 + 106442 0.67 0.407174
Target:  5'- -aCCGGCcCG-CCGGAcguguccgcuuugaaCGCCCGGGgCg -3'
miRNA:   3'- ggGGCCGcGCuGGCCU---------------GCGGGUCCgG- -5'
2068 3' -65.7 NC_001348.1 + 106756 0.71 0.219176
Target:  5'- aUCCCGGCGCcuuggcggaaaucGCCGcucGGCGUCCGGGCg -3'
miRNA:   3'- -GGGGCCGCGc------------UGGC---CUGCGGGUCCGg -5'
2068 3' -65.7 NC_001348.1 + 107213 0.68 0.380379
Target:  5'- gCCaCGGcCGCGGCCgcguggGGGagaGCCCAgagGGCCu -3'
miRNA:   3'- gGG-GCC-GCGCUGG------CCUg--CGGGU---CCGG- -5'
2068 3' -65.7 NC_001348.1 + 107472 0.67 0.419365
Target:  5'- aCUCCGGCacguaaaGCGGCaCGGGuucCGUUgAGGCCu -3'
miRNA:   3'- -GGGGCCG-------CGCUG-GCCU---GCGGgUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 107788 0.71 0.231507
Target:  5'- cCCCCGGUGUcggGGCCGcucauGAUGCCCGacggaagcccuuGGCCc -3'
miRNA:   3'- -GGGGCCGCG---CUGGC-----CUGCGGGU------------CCGG- -5'
2068 3' -65.7 NC_001348.1 + 108037 0.69 0.319412
Target:  5'- aCCCCGGCGCGuuUCGGugGgaagugaaacuaCAGGCa -3'
miRNA:   3'- -GGGGCCGCGCu-GGCCugCgg----------GUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.