miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2068 3' -65.7 NC_001348.1 + 121755 0.66 0.476388
Target:  5'- aCCCGGCGCGuuUCGGugGgaagugaaacuaCAGGCa -3'
miRNA:   3'- gGGGCCGCGCu-GGCCugCgg----------GUCCGg -5'
2068 3' -65.7 NC_001348.1 + 105269 0.69 0.322142
Target:  5'- aCCCCGGUGCGuccCCGu-CGUCCccGCCc -3'
miRNA:   3'- -GGGGCCGCGCu--GGCcuGCGGGucCGG- -5'
2068 3' -65.7 NC_001348.1 + 107213 0.68 0.380379
Target:  5'- gCCaCGGcCGCGGCCgcguggGGGagaGCCCAgagGGCCu -3'
miRNA:   3'- gGG-GCC-GCGCUGG------CCUg--CGGGU---CCGG- -5'
2068 3' -65.7 NC_001348.1 + 123350 0.67 0.407174
Target:  5'- -aCCGGCcCG-CCGGAcguguccgcuuugaaCGCCCGGGgCg -3'
miRNA:   3'- ggGGCCGcGCuGGCCU---------------GCGGGUCCgG- -5'
2068 3' -65.7 NC_001348.1 + 107472 0.67 0.419365
Target:  5'- aCUCCGGCacguaaaGCGGCaCGGGuucCGUUgAGGCCu -3'
miRNA:   3'- -GGGGCCG-------CGCUG-GCCU---GCGGgUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 120714 0.67 0.428445
Target:  5'- aCCUguUGGaCGCGGCCGcGGCGgCCgccgaacacaGGGCCc -3'
miRNA:   3'- -GGG--GCC-GCGCUGGC-CUGCgGG----------UCCGG- -5'
2068 3' -65.7 NC_001348.1 + 124429 0.67 0.428445
Target:  5'- gCCCCgGGUGUGcugcgagaccGCCGGguggguuuGCGCCCGgcGGUCa -3'
miRNA:   3'- -GGGG-CCGCGC----------UGGCC--------UGCGGGU--CCGG- -5'
2068 3' -65.7 NC_001348.1 + 23134 0.67 0.435959
Target:  5'- cCCCCGGCG-GuCUGGAUGuacauauCCguGGCUg -3'
miRNA:   3'- -GGGGCCGCgCuGGCCUGC-------GGguCCGG- -5'
2068 3' -65.7 NC_001348.1 + 117749 0.66 0.471121
Target:  5'- cCCCCGGgGCGgucauuaauucgGCgCGGAUGCauuuauuaUCGGGCg -3'
miRNA:   3'- -GGGGCCgCGC------------UG-GCCUGCG--------GGUCCGg -5'
2068 3' -65.7 NC_001348.1 + 124723 0.7 0.29562
Target:  5'- cCCCCGGUuu--CUGGGCGCCC-GGCg -3'
miRNA:   3'- -GGGGCCGcgcuGGCCUGCGGGuCCGg -5'
2068 3' -65.7 NC_001348.1 + 123597 0.7 0.276865
Target:  5'- aCUCGGCGgucACagaaGGAcuCGCCCGGGCCg -3'
miRNA:   3'- gGGGCCGCgc-UGg---CCU--GCGGGUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 123962 0.7 0.264898
Target:  5'- uUCCCGaGgGacggaGACCGGGgGCcgCCGGGCCg -3'
miRNA:   3'- -GGGGC-CgCg----CUGGCCUgCG--GGUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 123461 0.75 0.126635
Target:  5'- gCCCGGCGCcgguugcugguguugGACgCGGugGCCCucgagagguGGCCc -3'
miRNA:   3'- gGGGCCGCG---------------CUG-GCCugCGGGu--------CCGG- -5'
2068 3' -65.7 NC_001348.1 + 110601 0.75 0.12756
Target:  5'- gCCCCGGCGCGuuuuguacuCCGGGuugggagauccaccCGgCCAGGCUc -3'
miRNA:   3'- -GGGGCCGCGCu--------GGCCU--------------GCgGGUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 104911 0.75 0.138154
Target:  5'- cUCCCGGgGuCcGCCGGGCGCCCAGaaaCCg -3'
miRNA:   3'- -GGGGCCgC-GcUGGCCUGCGGGUCc--GG- -5'
2068 3' -65.7 NC_001348.1 + 121411 0.74 0.148478
Target:  5'- cUCCCGGCGCGGaaacCCGGugGaccuguaCCcGGCCc -3'
miRNA:   3'- -GGGGCCGCGCU----GGCCugCg------GGuCCGG- -5'
2068 3' -65.7 NC_001348.1 + 106089 0.74 0.152073
Target:  5'- gCCUGG-GCGuCCGGucGCGCCgGGGCCc -3'
miRNA:   3'- gGGGCCgCGCuGGCC--UGCGGgUCCGG- -5'
2068 3' -65.7 NC_001348.1 + 106304 0.72 0.192574
Target:  5'- gUCCGGCG-GGCCGGuCcaguucccgGCCCAGGCa -3'
miRNA:   3'- gGGGCCGCgCUGGCCuG---------CGGGUCCGg -5'
2068 3' -65.7 NC_001348.1 + 123036 0.71 0.219176
Target:  5'- aUCCCGGCGCcuuggcggaaaucGCCGcucGGCGUCCGGGCg -3'
miRNA:   3'- -GGGGCCGCGc------------UGGC---CUGCGGGUCCGg -5'
2068 3' -65.7 NC_001348.1 + 122004 0.71 0.231507
Target:  5'- cCCCCGGUGUcggGGCCGcucauGAUGCCCGacggaagcccuuGGCCc -3'
miRNA:   3'- -GGGGCCGCG---CUGGC-----CUGCGGGU------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.