Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20708 | 3' | -55.8 | NC_004688.1 | + | 516 | 0.67 | 0.76555 |
Target: 5'- aGCAGUGAUGGCcaagcauUCGGCCGccgcGCACAUUa -3' miRNA: 3'- -UGUCGUUGCUGu------GGCCGGU----CGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 1505 | 0.67 | 0.803586 |
Target: 5'- uACGGCAACGAguacgUGCgGGUUgAGUACGUCg -3' miRNA: 3'- -UGUCGUUGCU-----GUGgCCGG-UCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 4801 | 0.66 | 0.830402 |
Target: 5'- cGCAGgGAaauCGCCGGCgcuaugCAGUACGUCa -3' miRNA: 3'- -UGUCgUUgcuGUGGCCG------GUCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 8529 | 0.66 | 0.830402 |
Target: 5'- -gGGCGACGACACCG-CCAa-AUAUCc -3' miRNA: 3'- ugUCGUUGCUGUGGCcGGUcgUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 12689 | 0.69 | 0.684042 |
Target: 5'- aACGGC-ACGAU-CCGGgCAGCACGc- -3' miRNA: 3'- -UGUCGuUGCUGuGGCCgGUCGUGUag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 13482 | 0.7 | 0.620684 |
Target: 5'- -aAGU-ACGACGCCGGCacCAGCGCGc- -3' miRNA: 3'- ugUCGuUGCUGUGGCCG--GUCGUGUag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 14799 | 0.7 | 0.578507 |
Target: 5'- cCAGuCGAUGugACCGGCgCgGGCGCGUUg -3' miRNA: 3'- uGUC-GUUGCugUGGCCG-G-UCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 25596 | 0.7 | 0.589009 |
Target: 5'- cGCAGCc-UGAUGgCGGCCAGCGCcgCc -3' miRNA: 3'- -UGUCGuuGCUGUgGCCGGUCGUGuaG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 25842 | 0.66 | 0.830402 |
Target: 5'- aACGGgGACGAUGCCcucuuGGCgCAGCACc-- -3' miRNA: 3'- -UGUCgUUGCUGUGG-----CCG-GUCGUGuag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 29429 | 0.7 | 0.610106 |
Target: 5'- -gGGCAcACGA-GCCGagcgaGCCAGCGCAUCa -3' miRNA: 3'- ugUCGU-UGCUgUGGC-----CGGUCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 36183 | 0.68 | 0.704895 |
Target: 5'- uCGGCGccgaugcCGAUAUCGGCCAGgACAUg -3' miRNA: 3'- uGUCGUu------GCUGUGGCCGGUCgUGUAg -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 52328 | 0.67 | 0.775274 |
Target: 5'- aGCGGCAGCGGCGCaUGGCCAu------ -3' miRNA: 3'- -UGUCGUUGCUGUG-GCCGGUcguguag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 54746 | 0.69 | 0.684042 |
Target: 5'- uACGGUuuAUGGCGCUGGCCGGUAUu-- -3' miRNA: 3'- -UGUCGu-UGCUGUGGCCGGUCGUGuag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 55073 | 0.76 | 0.298087 |
Target: 5'- aGCGGCGcuCGACACCcggGGUUGGCGCAUCg -3' miRNA: 3'- -UGUCGUu-GCUGUGG---CCGGUCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 57233 | 0.72 | 0.496535 |
Target: 5'- cCGGCAuugACGuCGCCGGCCuGCuuGUCg -3' miRNA: 3'- uGUCGU---UGCuGUGGCCGGuCGugUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 59191 | 0.67 | 0.784862 |
Target: 5'- uCAGCGcCGACACCGG-CGG-ACGUUa -3' miRNA: 3'- uGUCGUuGCUGUGGCCgGUCgUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 64670 | 0.79 | 0.205333 |
Target: 5'- uGCAGCAGCccCACCGGCCAGC-UGUCc -3' miRNA: 3'- -UGUCGUUGcuGUGGCCGGUCGuGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 68868 | 0.66 | 0.838967 |
Target: 5'- gGCGGCGGgGuCGCCGGuCCGG-ACGUa -3' miRNA: 3'- -UGUCGUUgCuGUGGCC-GGUCgUGUAg -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 74650 | 0.67 | 0.784862 |
Target: 5'- cCGGCucgAACGcCGCCGGaCCA-CGCAUCg -3' miRNA: 3'- uGUCG---UUGCuGUGGCC-GGUcGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 75515 | 0.77 | 0.25125 |
Target: 5'- cCGGCuccgGCGGCACCGGCCAGuuUugGUCa -3' miRNA: 3'- uGUCGu---UGCUGUGGCCGGUC--GugUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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