Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20708 | 3' | -55.8 | NC_004688.1 | + | 77190 | 0.66 | 0.838967 |
Target: 5'- gAUAGaCAACGugguguuacCGCCGGCCGcGC-CGUCa -3' miRNA: 3'- -UGUC-GUUGCu--------GUGGCCGGU-CGuGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 88642 | 0.69 | 0.663005 |
Target: 5'- -uGGCua-GAC-UUGGCCAGCGCAUCc -3' miRNA: 3'- ugUCGuugCUGuGGCCGGUCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 99737 | 0.69 | 0.663005 |
Target: 5'- cGCuGCGagGCGACcUCGGUCAGCACGc- -3' miRNA: 3'- -UGuCGU--UGCUGuGGCCGGUCGUGUag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 54746 | 0.69 | 0.684042 |
Target: 5'- uACGGUuuAUGGCGCUGGCCGGUAUu-- -3' miRNA: 3'- -UGUCGu-UGCUGUGGCCGGUCGUGuag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 92411 | 0.69 | 0.684042 |
Target: 5'- gGCGGaAGCGGCaACCGGgaaCCGGCACcUCg -3' miRNA: 3'- -UGUCgUUGCUG-UGGCC---GGUCGUGuAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 12689 | 0.69 | 0.684042 |
Target: 5'- aACGGC-ACGAU-CCGGgCAGCACGc- -3' miRNA: 3'- -UGUCGuUGCUGuGGCCgGUCGUGUag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 104042 | 0.68 | 0.694496 |
Target: 5'- gACAGCAGCGGguuuuCCGGgUcgacgAGCGCGUCg -3' miRNA: 3'- -UGUCGUUGCUgu---GGCCgG-----UCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 36183 | 0.68 | 0.704895 |
Target: 5'- uCGGCGccgaugcCGAUAUCGGCCAGgACAUg -3' miRNA: 3'- uGUCGUu------GCUGUGGCCGGUCgUGUAg -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 77630 | 0.68 | 0.704895 |
Target: 5'- uCGGCAAgucCGcCACaCGGCCAcGCACAUa -3' miRNA: 3'- uGUCGUU---GCuGUG-GCCGGU-CGUGUAg -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 100490 | 0.69 | 0.641861 |
Target: 5'- gGCGGCGcaGGCGCUccuuGGCCGGCuCGUCg -3' miRNA: 3'- -UGUCGUugCUGUGG----CCGGUCGuGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 13482 | 0.7 | 0.620684 |
Target: 5'- -aAGU-ACGACGCCGGCacCAGCGCGc- -3' miRNA: 3'- ugUCGuUGCUGUGGCCG--GUCGUGUag -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 29429 | 0.7 | 0.610106 |
Target: 5'- -gGGCAcACGA-GCCGagcgaGCCAGCGCAUCa -3' miRNA: 3'- ugUCGU-UGCUgUGGC-----CGGUCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 75515 | 0.77 | 0.25125 |
Target: 5'- cCGGCuccgGCGGCACCGGCCAGuuUugGUCa -3' miRNA: 3'- uGUCGu---UGCUGUGGCCGGUC--GugUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 55073 | 0.76 | 0.298087 |
Target: 5'- aGCGGCGcuCGACACCcggGGUUGGCGCAUCg -3' miRNA: 3'- -UGUCGUu-GCUGUGG---CCGGUCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 95650 | 0.74 | 0.411169 |
Target: 5'- -uGGuCAACGGCGCCGcGCCgcGGCACAUg -3' miRNA: 3'- ugUC-GUUGCUGUGGC-CGG--UCGUGUAg -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 57233 | 0.72 | 0.496535 |
Target: 5'- cCGGCAuugACGuCGCCGGCCuGCuuGUCg -3' miRNA: 3'- uGUCGU---UGCuGUGGCCGGuCGugUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 93246 | 0.72 | 0.496535 |
Target: 5'- gGCGGCAacaucgucggcGCGAUcgGCgCGGCCGGCGC-UCa -3' miRNA: 3'- -UGUCGU-----------UGCUG--UG-GCCGGUCGUGuAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 105504 | 0.71 | 0.557634 |
Target: 5'- aAUGGUGugGGCACCGGUCcGCGgGUCc -3' miRNA: 3'- -UGUCGUugCUGUGGCCGGuCGUgUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 14799 | 0.7 | 0.578507 |
Target: 5'- cCAGuCGAUGugACCGGCgCgGGCGCGUUg -3' miRNA: 3'- uGUC-GUUGCugUGGCCG-G-UCGUGUAG- -5' |
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20708 | 3' | -55.8 | NC_004688.1 | + | 25596 | 0.7 | 0.589009 |
Target: 5'- cGCAGCc-UGAUGgCGGCCAGCGCcgCc -3' miRNA: 3'- -UGUCGuuGCUGUgGCCGGUCGUGuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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